Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24456 | 3' | -50.9 | NC_005264.1 | + | 91897 | 0.69 | 0.965172 |
Target: 5'- uUGGCCGCGGcagcgauggGCGGGCGCGgCGAcCAu -3' miRNA: 3'- -AUUGGUGCUa--------CGCUUGCGCaGCUuGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 76344 | 0.72 | 0.880111 |
Target: 5'- uUGGCCGCGcgGCGAcugcgcgcagGCGCGUUGGu-- -3' miRNA: 3'- -AUUGGUGCuaCGCU----------UGCGCAGCUugu -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 114144 | 0.72 | 0.880111 |
Target: 5'- --cCCGCGA-GCGAcCGCGaCGAGCAg -3' miRNA: 3'- auuGGUGCUaCGCUuGCGCaGCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 132008 | 0.7 | 0.935836 |
Target: 5'- cGACgACGAcGCGAGCcCGuUCGAGCAc -3' miRNA: 3'- aUUGgUGCUaCGCUUGcGC-AGCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 18062 | 0.7 | 0.945446 |
Target: 5'- -cGCCGCGAgccaGGGCGCG-CGGGCAu -3' miRNA: 3'- auUGGUGCUacg-CUUGCGCaGCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 135551 | 0.7 | 0.949875 |
Target: 5'- gGACCGCGAUGacuuucgaGAagccGCGCGUCGcucGCGa -3' miRNA: 3'- aUUGGUGCUACg-------CU----UGCGCAGCu--UGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 94408 | 0.69 | 0.954058 |
Target: 5'- aGACCGCGgcGCGGacuGCGCGaUCGcuGACGu -3' miRNA: 3'- aUUGGUGCuaCGCU---UGCGC-AGC--UUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 122563 | 0.69 | 0.957999 |
Target: 5'- gAACCGCGAcGCGGcgGCGUCcAGCAu -3' miRNA: 3'- aUUGGUGCUaCGCUugCGCAGcUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 66538 | 0.69 | 0.965172 |
Target: 5'- cGACCGCGuUGCGGGCGuCGgCGAuuuccACAa -3' miRNA: 3'- aUUGGUGCuACGCUUGC-GCaGCU-----UGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 16451 | 0.72 | 0.880111 |
Target: 5'- --cCCGCgGGUGUGAACGUgGUCGAACc -3' miRNA: 3'- auuGGUG-CUACGCUUGCG-CAGCUUGu -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 60269 | 0.72 | 0.872697 |
Target: 5'- gAGCUGCGGUgaGCGc-CGCGUCGGGCAu -3' miRNA: 3'- aUUGGUGCUA--CGCuuGCGCAGCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 123925 | 0.72 | 0.865053 |
Target: 5'- gGACCGCGGagGCGAGCGaCGaagaugCGAACGa -3' miRNA: 3'- aUUGGUGCUa-CGCUUGC-GCa-----GCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 27927 | 0.76 | 0.676384 |
Target: 5'- cGACCGCGGUguugGCGuucuGCGCGUCGGugGu -3' miRNA: 3'- aUUGGUGCUA----CGCu---UGCGCAGCUugU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 85648 | 0.76 | 0.7076 |
Target: 5'- aUGGCCGCGAUggcccGCGAGCGCGacaUGAACGu -3' miRNA: 3'- -AUUGGUGCUA-----CGCUUGCGCa--GCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 118576 | 0.75 | 0.728087 |
Target: 5'- --uCCGCGcgGCGuGACGCGcCGAACAg -3' miRNA: 3'- auuGGUGCuaCGC-UUGCGCaGCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 59976 | 0.75 | 0.738203 |
Target: 5'- cAGCCACGcgGCGGugGCcG-CGAGCGa -3' miRNA: 3'- aUUGGUGCuaCGCUugCG-CaGCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 122647 | 0.74 | 0.777584 |
Target: 5'- gGGCCGCGAggGCGGGCGCG-CuGACAu -3' miRNA: 3'- aUUGGUGCUa-CGCUUGCGCaGcUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 28869 | 0.74 | 0.796484 |
Target: 5'- gGACCGCGcgGCGAACGCcaccgCGAAg- -3' miRNA: 3'- aUUGGUGCuaCGCUUGCGca---GCUUgu -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 3480 | 0.73 | 0.849102 |
Target: 5'- --uCCACGAUGUGGcACGCGUCGu--- -3' miRNA: 3'- auuGGUGCUACGCU-UGCGCAGCuugu -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 133076 | 0.73 | 0.849102 |
Target: 5'- gAGCCGCGA-GCGAGCuGUGgugCGAGCu -3' miRNA: 3'- aUUGGUGCUaCGCUUG-CGCa--GCUUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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