Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24456 | 3' | -50.9 | NC_005264.1 | + | 8062 | 0.66 | 0.995783 |
Target: 5'- --cCCACGucGCGGcCGCaGUCGGGCAc -3' miRNA: 3'- auuGGUGCuaCGCUuGCG-CAGCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 5684 | 0.68 | 0.974247 |
Target: 5'- --cCCACGAguacaGAGCGCG-CGGGCAa -3' miRNA: 3'- auuGGUGCUacg--CUUGCGCaGCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 92194 | 0.68 | 0.971145 |
Target: 5'- cGGCCACGGUGUuguuGAcgcgccuGCGCG-CGAACu -3' miRNA: 3'- aUUGGUGCUACG----CU-------UGCGCaGCUUGu -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 72424 | 1.07 | 0.012386 |
Target: 5'- uUAACCACGAUGCGAACGCGUCGAACAc -3' miRNA: 3'- -AUUGGUGCUACGCUUGCGCAGCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 141373 | 0.66 | 0.995077 |
Target: 5'- --cCCAUGAUGU--ACGCGaaUCGGACGc -3' miRNA: 3'- auuGGUGCUACGcuUGCGC--AGCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 59760 | 0.66 | 0.994278 |
Target: 5'- cGGCUGCGAcGCGGACGCuUCGcggGACu -3' miRNA: 3'- aUUGGUGCUaCGCUUGCGcAGC---UUGu -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 94229 | 0.66 | 0.993379 |
Target: 5'- -uGCUACGAUGCGcuACGCGgccacaCGAAa- -3' miRNA: 3'- auUGGUGCUACGCu-UGCGCa-----GCUUgu -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 6323 | 0.66 | 0.993283 |
Target: 5'- gAGCCGCGAgcccccguagcugUGCGAuACGCG--GGACAg -3' miRNA: 3'- aUUGGUGCU-------------ACGCU-UGCGCagCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 4343 | 0.67 | 0.989984 |
Target: 5'- --cCCugGcgGCuGAgcGCGCGUCGcAGCAu -3' miRNA: 3'- auuGGugCuaCG-CU--UGCGCAGC-UUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 120896 | 0.67 | 0.983303 |
Target: 5'- uUGACCACGcgGCGGaaaaacuACGC--CGAGCGg -3' miRNA: 3'- -AUUGGUGCuaCGCU-------UGCGcaGCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 34108 | 0.67 | 0.987051 |
Target: 5'- aUGGCUcaGCGgcGCGAAacaGCGUCGAGg- -3' miRNA: 3'- -AUUGG--UGCuaCGCUUg--CGCAGCUUgu -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 114848 | 0.66 | 0.99124 |
Target: 5'- --uCCACGGUGCGAu--CGUCGAc-- -3' miRNA: 3'- auuGGUGCUACGCUugcGCAGCUugu -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 5261 | 0.66 | 0.995783 |
Target: 5'- -cGCCGgGAgGCGAGuCGCGgcCGGACGg -3' miRNA: 3'- auUGGUgCUaCGCUU-GCGCa-GCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 142842 | 0.67 | 0.987051 |
Target: 5'- cAACCggauGCGA-GCGAGCGCgGUCGGu-- -3' miRNA: 3'- aUUGG----UGCUaCGCUUGCG-CAGCUugu -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 90954 | 0.66 | 0.995783 |
Target: 5'- ---aCACGGUGUu--UGCGUCGGGCGc -3' miRNA: 3'- auugGUGCUACGcuuGCGCAGCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 95981 | 0.66 | 0.99124 |
Target: 5'- --uCCGCGc-GCGAucuauuuuCGCGUCGGGCGa -3' miRNA: 3'- auuGGUGCuaCGCUu-------GCGCAGCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 123878 | 0.67 | 0.985357 |
Target: 5'- ---aUACGAcaaGUGAACGCGUCGGAg- -3' miRNA: 3'- auugGUGCUa--CGCUUGCGCAGCUUgu -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 34267 | 0.68 | 0.971438 |
Target: 5'- gAGgCGCGG-GCG-ACGCGUCGAAgAg -3' miRNA: 3'- aUUgGUGCUaCGCuUGCGCAGCUUgU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 31053 | 0.66 | 0.995783 |
Target: 5'- cGGCUGCGuUGCGGACgGCaggCGAGCGa -3' miRNA: 3'- aUUGGUGCuACGCUUG-CGca-GCUUGU- -5' |
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24456 | 3' | -50.9 | NC_005264.1 | + | 50318 | 0.66 | 0.994278 |
Target: 5'- cGGCCugGAgccGCGAguacGCGgCGUCGAc-- -3' miRNA: 3'- aUUGGugCUa--CGCU----UGC-GCAGCUugu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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