miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24456 3' -50.9 NC_005264.1 + 153812 0.74 0.777584
Target:  5'- aAGCCA-GgcGCGAACGCGUCGGGa- -3'
miRNA:   3'- aUUGGUgCuaCGCUUGCGCAGCUUgu -5'
24456 3' -50.9 NC_005264.1 + 153294 0.68 0.971438
Target:  5'- gAGgCGCGG-GCG-ACGCGUCGAAgAg -3'
miRNA:   3'- aUUgGUGCUaCGCuUGCGCAGCUUgU- -5'
24456 3' -50.9 NC_005264.1 + 153135 0.67 0.987051
Target:  5'- aUGGCUcaGCGgcGCGAAacaGCGUCGAGg- -3'
miRNA:   3'- -AUUGG--UGCuaCGCUUg--CGCAGCUUgu -5'
24456 3' -50.9 NC_005264.1 + 150080 0.66 0.995783
Target:  5'- cGGCUGCGuUGCGGACgGCaggCGAGCGa -3'
miRNA:   3'- aUUGGUGCuACGCUUG-CGca-GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 146509 0.68 0.971438
Target:  5'- gGGCCGCGcgGUuccaGAgcuACGCGUCGAGa- -3'
miRNA:   3'- aUUGGUGCuaCG----CU---UGCGCAGCUUgu -5'
24456 3' -50.9 NC_005264.1 + 144974 0.66 0.994278
Target:  5'- cAGCCcgcCGAuUGCucACGCGgUCGAACAg -3'
miRNA:   3'- aUUGGu--GCU-ACGcuUGCGC-AGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 142842 0.67 0.987051
Target:  5'- cAACCggauGCGA-GCGAGCGCgGUCGGu-- -3'
miRNA:   3'- aUUGG----UGCUaCGCUUGCG-CAGCUugu -5'
24456 3' -50.9 NC_005264.1 + 141373 0.66 0.995077
Target:  5'- --cCCAUGAUGU--ACGCGaaUCGGACGc -3'
miRNA:   3'- auuGGUGCUACGcuUGCGC--AGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 135551 0.7 0.949875
Target:  5'- gGACCGCGAUGacuuucgaGAagccGCGCGUCGcucGCGa -3'
miRNA:   3'- aUUGGUGCUACg-------CU----UGCGCAGCu--UGU- -5'
24456 3' -50.9 NC_005264.1 + 133076 0.73 0.849102
Target:  5'- gAGCCGCGA-GCGAGCuGUGgugCGAGCu -3'
miRNA:   3'- aUUGGUGCUaCGCUUG-CGCa--GCUUGu -5'
24456 3' -50.9 NC_005264.1 + 132008 0.7 0.935836
Target:  5'- cGACgACGAcGCGAGCcCGuUCGAGCAc -3'
miRNA:   3'- aUUGgUGCUaCGCUUGcGC-AGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 127089 0.66 0.995783
Target:  5'- --cCCACGucGCGGcCGCaGUCGGGCAc -3'
miRNA:   3'- auuGGUGCuaCGCUuGCG-CAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 125350 0.66 0.993283
Target:  5'- gAGCCGCGAgcccccguagcugUGCGAuACGCG--GGACAg -3'
miRNA:   3'- aUUGGUGCU-------------ACGCU-UGCGCagCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 124711 0.68 0.974247
Target:  5'- --cCCACGAguacaGAGCGCG-CGGGCAa -3'
miRNA:   3'- auuGGUGCUacg--CUUGCGCaGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 124288 0.66 0.995783
Target:  5'- -cGCCGgGAgGCGAGuCGCGgcCGGACGg -3'
miRNA:   3'- auUGGUgCUaCGCUU-GCGCa-GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 123925 0.72 0.865053
Target:  5'- gGACCGCGGagGCGAGCGaCGaagaugCGAACGa -3'
miRNA:   3'- aUUGGUGCUa-CGCUUGC-GCa-----GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 123878 0.67 0.985357
Target:  5'- ---aUACGAcaaGUGAACGCGUCGGAg- -3'
miRNA:   3'- auugGUGCUa--CGCUUGCGCAGCUUgu -5'
24456 3' -50.9 NC_005264.1 + 123370 0.67 0.989984
Target:  5'- --cCCugGcgGCuGAgcGCGCGUCGcAGCAu -3'
miRNA:   3'- auuGGugCuaCG-CU--UGCGCAGC-UUGU- -5'
24456 3' -50.9 NC_005264.1 + 122647 0.74 0.777584
Target:  5'- gGGCCGCGAggGCGGGCGCG-CuGACAu -3'
miRNA:   3'- aUUGGUGCUa-CGCUUGCGCaGcUUGU- -5'
24456 3' -50.9 NC_005264.1 + 122563 0.69 0.957999
Target:  5'- gAACCGCGAcGCGGcgGCGUCcAGCAu -3'
miRNA:   3'- aUUGGUGCUaCGCUugCGCAGcUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.