miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24456 5' -63.1 NC_005264.1 + 67483 0.66 0.667453
Target:  5'- uGGCGGcacGCGCCGCCcGUCGGccccAUUGc-- -3'
miRNA:   3'- -CCGCC---CGCGGCGGcCAGCC----UAGCaca -5'
24456 5' -63.1 NC_005264.1 + 5050 0.66 0.667453
Target:  5'- cGUGGGCGCCGCCuagcuGGgaagacgccgaUGGAaCGUGg -3'
miRNA:   3'- cCGCCCGCGGCGG-----CCa----------GCCUaGCACa -5'
24456 5' -63.1 NC_005264.1 + 65406 0.66 0.657883
Target:  5'- uGCGGguaauuuccGCGCC-CUGGUCaaGGAUUGUGUc -3'
miRNA:   3'- cCGCC---------CGCGGcGGCCAG--CCUAGCACA- -5'
24456 5' -63.1 NC_005264.1 + 129549 0.66 0.648295
Target:  5'- gGGCuuaGGCGUCGCCG--CGuGGUCGUGg -3'
miRNA:   3'- -CCGc--CCGCGGCGGCcaGC-CUAGCACa -5'
24456 5' -63.1 NC_005264.1 + 23931 0.66 0.642536
Target:  5'- cGGCGGuucuggucGCGCCGCCgaugGGUauguggggcgguuggUGGGUgGUGUa -3'
miRNA:   3'- -CCGCC--------CGCGGCGG----CCA---------------GCCUAgCACA- -5'
24456 5' -63.1 NC_005264.1 + 97974 0.66 0.638695
Target:  5'- uGCGGGCaaucucccaGCCGCCGGaCu--UCGUGUu -3'
miRNA:   3'- cCGCCCG---------CGGCGGCCaGccuAGCACA- -5'
24456 5' -63.1 NC_005264.1 + 34141 0.66 0.638695
Target:  5'- -aCGGGCG-CGuaGGcuUCGGGUCGUGg -3'
miRNA:   3'- ccGCCCGCgGCggCC--AGCCUAGCACa -5'
24456 5' -63.1 NC_005264.1 + 31026 0.67 0.590757
Target:  5'- gGGCGacGGUGCCGCCuagCGG-UCGUGc -3'
miRNA:   3'- -CCGC--CCGCGGCGGccaGCCuAGCACa -5'
24456 5' -63.1 NC_005264.1 + 150053 0.67 0.590757
Target:  5'- gGGCGacGGUGCCGCCuagCGG-UCGUGc -3'
miRNA:   3'- -CCGC--CCGCGGCGGccaGCCuAGCACa -5'
24456 5' -63.1 NC_005264.1 + 75729 0.67 0.590757
Target:  5'- cGCGGGCGCCggagGCCaGUCuGGGUgCGUu- -3'
miRNA:   3'- cCGCCCGCGG----CGGcCAG-CCUA-GCAca -5'
24456 5' -63.1 NC_005264.1 + 56417 0.67 0.590757
Target:  5'- aGCGcGGCGCCGUCGaGcuUCGGGUCu--- -3'
miRNA:   3'- cCGC-CCGCGGCGGC-C--AGCCUAGcaca -5'
24456 5' -63.1 NC_005264.1 + 102888 0.67 0.589803
Target:  5'- aGCGGcGCGgacaccaugauaaCCGCCGaGcUCGGAUCGUa- -3'
miRNA:   3'- cCGCC-CGC-------------GGCGGC-C-AGCCUAGCAca -5'
24456 5' -63.1 NC_005264.1 + 136359 0.67 0.581225
Target:  5'- gGGCgcuGGGCGCUGCCGG-CGcGAauagCGcUGUg -3'
miRNA:   3'- -CCG---CCCGCGGCGGCCaGC-CUa---GC-ACA- -5'
24456 5' -63.1 NC_005264.1 + 149884 0.67 0.571725
Target:  5'- cGGCGGcGCGCCGCCcGGUaGGcaacggCGUc- -3'
miRNA:   3'- -CCGCC-CGCGGCGG-CCAgCCua----GCAca -5'
24456 5' -63.1 NC_005264.1 + 26442 0.67 0.571725
Target:  5'- cGGaCGGGCGuuGUCGGUCGccAUCGc-- -3'
miRNA:   3'- -CC-GCCCGCggCGGCCAGCc-UAGCaca -5'
24456 5' -63.1 NC_005264.1 + 30858 0.67 0.571725
Target:  5'- cGGCGGcGCGCCGCCcGGUaGGcaacggCGUc- -3'
miRNA:   3'- -CCGCC-CGCGGCGG-CCAgCCua----GCAca -5'
24456 5' -63.1 NC_005264.1 + 69403 0.68 0.534154
Target:  5'- gGGCGGGUaggcgcgccuGCCGCCG-UCGGAguaUGUa -3'
miRNA:   3'- -CCGCCCG----------CGGCGGCcAGCCUagcACA- -5'
24456 5' -63.1 NC_005264.1 + 156186 0.68 0.533225
Target:  5'- cGGCGuGGCGgCGCCGGcuauaugUCGGggCGcagGUc -3'
miRNA:   3'- -CCGC-CCGCgGCGGCC-------AGCCuaGCa--CA- -5'
24456 5' -63.1 NC_005264.1 + 149428 0.68 0.524893
Target:  5'- cGGCGGuCGCgCGCCGGUgCGGAgagcugCGg-- -3'
miRNA:   3'- -CCGCCcGCG-GCGGCCA-GCCUa-----GCaca -5'
24456 5' -63.1 NC_005264.1 + 129560 0.68 0.524893
Target:  5'- uGUGcGGCGCCGCCcucagGGgcgCGGAUCGc-- -3'
miRNA:   3'- cCGC-CCGCGGCGG-----CCa--GCCUAGCaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.