miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24461 5' -48.4 NC_005264.1 + 22831 0.67 0.997784
Target:  5'- -aGCCUcaGCGAGACGGGuacGGACGGGc -3'
miRNA:   3'- cgCGGGuaCGCUCUGUUU---UCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 25529 0.67 0.997351
Target:  5'- aGCGCCCAUaagGCGGcGCGGAcaAGGCGc-- -3'
miRNA:   3'- -CGCGGGUA---CGCUcUGUUU--UCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 26972 0.67 0.99685
Target:  5'- -gGCCCAUGCGucuGAuCAGcgGAGGCAc-- -3'
miRNA:   3'- cgCGGGUACGCu--CU-GUU--UUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 27456 0.68 0.994858
Target:  5'- uGCGCCgAgcgGCGcaGCAAAGGACAu-- -3'
miRNA:   3'- -CGCGGgUa--CGCucUGUUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 27901 0.69 0.987867
Target:  5'- aGCGUCUcgGCGAGGguGAGcGACGAc- -3'
miRNA:   3'- -CGCGGGuaCGCUCUguUUU-CUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 30087 0.66 0.999165
Target:  5'- cGCGCCCGgacagaaucGCGAGuCGAGAuGCGGGc -3'
miRNA:   3'- -CGCGGGUa--------CGCUCuGUUUUcUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 30410 0.69 0.99195
Target:  5'- cGCGCCgGUGCGGagagcugcGGCGGAGGAgGu-- -3'
miRNA:   3'- -CGCGGgUACGCU--------CUGUUUUCUgUuuu -5'
24461 5' -48.4 NC_005264.1 + 32057 0.68 0.993036
Target:  5'- gGCGCCCGga-GAGACccAAGAGuGCGAAAg -3'
miRNA:   3'- -CGCGGGUacgCUCUG--UUUUC-UGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 33878 0.66 0.998745
Target:  5'- aGCGUCCGcuCGAGGCGGcGGugGAAc -3'
miRNA:   3'- -CGCGGGUacGCUCUGUUuUCugUUUu -5'
24461 5' -48.4 NC_005264.1 + 35749 0.71 0.958604
Target:  5'- cGUGCCCGacUGCGgccgcgacgugGGugAAGAGGCGGAGg -3'
miRNA:   3'- -CGCGGGU--ACGC-----------UCugUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 36465 0.71 0.969212
Target:  5'- -aGCCgAgucUGaCGAGGCGGAGGACGAAGa -3'
miRNA:   3'- cgCGGgU---AC-GCUCUGUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 38616 0.66 0.999325
Target:  5'- uCGCCgCGgcGCGAGACAc--GACAGGAg -3'
miRNA:   3'- cGCGG-GUa-CGCUCUGUuuuCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 38813 0.7 0.98436
Target:  5'- gGCGaCCCcgGCGcGGACGAGAacGACGAc- -3'
miRNA:   3'- -CGC-GGGuaCGC-UCUGUUUU--CUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 39689 0.66 0.999325
Target:  5'- aGCGgCCGUGUuuGGCAGAggGGACAc-- -3'
miRNA:   3'- -CGCgGGUACGcuCUGUUU--UCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 40063 0.72 0.940903
Target:  5'- aGCGCCCcgGCG--GCAAGAGGCc--- -3'
miRNA:   3'- -CGCGGGuaCGCucUGUUUUCUGuuuu -5'
24461 5' -48.4 NC_005264.1 + 45123 0.66 0.998973
Target:  5'- uCGUCCGcGUGGGGCGAAgaaccAGACAGGc -3'
miRNA:   3'- cGCGGGUaCGCUCUGUUU-----UCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 45346 0.79 0.643967
Target:  5'- cGCGCCCGaGaCGAGGCGAAAGGgAGGAg -3'
miRNA:   3'- -CGCGGGUaC-GCUCUGUUUUCUgUUUU- -5'
24461 5' -48.4 NC_005264.1 + 46604 0.67 0.998156
Target:  5'- cUGUCCcUGCGGGGC-GAGGACGGc- -3'
miRNA:   3'- cGCGGGuACGCUCUGuUUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 49911 0.7 0.98436
Target:  5'- cGCGCCCAaaucccgcugGCGGcGACuGAGGAUGAGAa -3'
miRNA:   3'- -CGCGGGUa---------CGCU-CUGuUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 53581 0.76 0.82805
Target:  5'- cGCGCCCGacGCGuGGCGAGuauuAGACGAAAa -3'
miRNA:   3'- -CGCGGGUa-CGCuCUGUUU----UCUGUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.