miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24461 5' -48.4 NC_005264.1 + 244 0.66 0.998973
Target:  5'- gGCGCCaCA-GCGAGGCGGGccgcucGACAu-- -3'
miRNA:   3'- -CGCGG-GUaCGCUCUGUUUu-----CUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 1006 0.82 0.494413
Target:  5'- cGCGCCCGUGUG-GugGGGGGGCAGGGg -3'
miRNA:   3'- -CGCGGGUACGCuCugUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 2203 0.69 0.992399
Target:  5'- gGCGCCCAUGCGcGcUAAggguuuccccuaaccGAGACGAc- -3'
miRNA:   3'- -CGCGGGUACGCuCuGUU---------------UUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 2930 0.67 0.997351
Target:  5'- uCGCCgA-GCGAGACGgacggGAAGACGGc- -3'
miRNA:   3'- cGCGGgUaCGCUCUGU-----UUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 3676 0.69 0.987708
Target:  5'- gGCGgCCGUcucggcgGCGAGACGagGAGGACGGc- -3'
miRNA:   3'- -CGCgGGUA-------CGCUCUGU--UUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 3823 0.68 0.994858
Target:  5'- cGgGCCCggGCGGGGCcgcAGGAgGAAAu -3'
miRNA:   3'- -CgCGGGuaCGCUCUGuu-UUCUgUUUU- -5'
24461 5' -48.4 NC_005264.1 + 4032 0.66 0.998745
Target:  5'- cGgGCCgAUGCaucagGAGACGAuGGGCGAc- -3'
miRNA:   3'- -CgCGGgUACG-----CUCUGUUuUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 5861 0.68 0.995612
Target:  5'- uCGCCCuauCGAGGgGGAGGGCGAGu -3'
miRNA:   3'- cGCGGGuacGCUCUgUUUUCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 6678 0.68 0.995612
Target:  5'- gGCGCCagcaGCGAGGCc-GAGACGGc- -3'
miRNA:   3'- -CGCGGgua-CGCUCUGuuUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 8292 0.71 0.969212
Target:  5'- gGCGCCCGUGgGcGAC-GGGGGCAc-- -3'
miRNA:   3'- -CGCGGGUACgCuCUGuUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 12047 0.68 0.994777
Target:  5'- aGCGCCCgcgaaccaucccgGUGCGAG-CcAAAGGCGc-- -3'
miRNA:   3'- -CGCGGG-------------UACGCUCuGuUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 12994 0.67 0.99685
Target:  5'- -aGCCCGUuCGAG-CAcGAGGCGGAAa -3'
miRNA:   3'- cgCGGGUAcGCUCuGUuUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 13283 0.66 0.998745
Target:  5'- cGCGCCa--GCGAGGCGGGucGugGAGc -3'
miRNA:   3'- -CGCGGguaCGCUCUGUUUu-CugUUUu -5'
24461 5' -48.4 NC_005264.1 + 13562 0.66 0.999325
Target:  5'- aGCGgCgCggGCGGGACcgggGAAGGGCGGAAc -3'
miRNA:   3'- -CGCgG-GuaCGCUCUG----UUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 14893 0.72 0.939405
Target:  5'- cGCGUCCAUGCuuauGGACGuggagcugccauucAAGGACAAGAu -3'
miRNA:   3'- -CGCGGGUACGc---UCUGU--------------UUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 16029 0.68 0.994858
Target:  5'- cGCGCCUccGUGCagucGAgGGAAGACGGGAg -3'
miRNA:   3'- -CGCGGG--UACGcu--CUgUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 16392 0.66 0.999325
Target:  5'- aUGCCCGUgGCGcauuGGCAcucggGGAGGCAAGGg -3'
miRNA:   3'- cGCGGGUA-CGCu---CUGU-----UUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 16680 0.72 0.949834
Target:  5'- aCGUgCAUGCGAGGCAucgacacGAAGACGu-- -3'
miRNA:   3'- cGCGgGUACGCUCUGU-------UUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 18427 0.7 0.981915
Target:  5'- cGCGCCCucucgcucggcGCGGGGuCGAAGGACGu-- -3'
miRNA:   3'- -CGCGGGua---------CGCUCU-GUUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 19491 0.67 0.998156
Target:  5'- cGCGCaCC-UGCGAGGuuccagcugcCAGAcGACGAGAa -3'
miRNA:   3'- -CGCG-GGuACGCUCU----------GUUUuCUGUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.