miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24461 5' -48.4 NC_005264.1 + 117242 0.68 0.994003
Target:  5'- uCGCCCcgGCGAuGCGGAGaACGAGAc -3'
miRNA:   3'- cGCGGGuaCGCUcUGUUUUcUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 49911 0.7 0.98436
Target:  5'- cGCGCCCAaaucccgcugGCGGcGACuGAGGAUGAGAa -3'
miRNA:   3'- -CGCGGGUa---------CGCU-CUGuUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 157839 0.7 0.98436
Target:  5'- gGCGaCCCcgGCGcGGACGAGAacGACGAc- -3'
miRNA:   3'- -CGC-GGGuaCGC-UCUGUUUU--CUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 122703 0.69 0.987708
Target:  5'- gGCGgCCGUcucggcgGCGAGACGagGAGGACGGc- -3'
miRNA:   3'- -CGCgGGUA-------CGCUCUGU--UUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 27901 0.69 0.987867
Target:  5'- aGCGUCUcgGCGAGGguGAGcGACGAc- -3'
miRNA:   3'- -CGCGGGuaCGCUCUguUUU-CUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 104096 0.69 0.99195
Target:  5'- cGCGCUCAUGaaAGACAu-GGGCGAc- -3'
miRNA:   3'- -CGCGGGUACgcUCUGUuuUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 149437 0.69 0.99195
Target:  5'- cGCGCCgGUGCGGagagcugcGGCGGAGGAgGu-- -3'
miRNA:   3'- -CGCGGgUACGCU--------CUGUUUUCUgUuuu -5'
24461 5' -48.4 NC_005264.1 + 2203 0.69 0.992399
Target:  5'- gGCGCCCAUGCGcGcUAAggguuuccccuaaccGAGACGAc- -3'
miRNA:   3'- -CGCGGGUACGCuCuGUU---------------UUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 151084 0.68 0.993036
Target:  5'- gGCGCCCGga-GAGACccAAGAGuGCGAAAg -3'
miRNA:   3'- -CGCGGGUacgCUCUG--UUUUC-UGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 116075 0.7 0.983774
Target:  5'- cGCGCCCAaGCGAagaucugguccugcGACgGAAGGACGu-- -3'
miRNA:   3'- -CGCGGGUaCGCU--------------CUG-UUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 70592 0.7 0.983171
Target:  5'- aGCGCgCuugGCGAGGCGGGccuucagagcaugcuGGACGAGAa -3'
miRNA:   3'- -CGCGgGua-CGCUCUGUUU---------------UCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 148563 0.7 0.982342
Target:  5'- -aGCCCAUGCcuuauuuguGGGACAcuAGAGACGc-- -3'
miRNA:   3'- cgCGGGUACG---------CUCUGU--UUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 133249 0.73 0.918927
Target:  5'- aGCGCCgAcGCGcaAGACAAAGGACGc-- -3'
miRNA:   3'- -CGCGGgUaCGC--UCUGUUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 14893 0.72 0.939405
Target:  5'- cGCGUCCAUGCuuauGGACGuggagcugccauucAAGGACAAGAu -3'
miRNA:   3'- -CGCGGGUACGc---UCUGU--------------UUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 159090 0.72 0.940903
Target:  5'- aGCGCCCcgGCG--GCAAGAGGCc--- -3'
miRNA:   3'- -CGCGGGuaCGCucUGUUUUCUGuuuu -5'
24461 5' -48.4 NC_005264.1 + 154775 0.71 0.958604
Target:  5'- cGUGCCCGacUGCGgccgcgacgugGGugAAGAGGCGGAGg -3'
miRNA:   3'- -CGCGGGU--ACGC-----------UCugUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 142750 0.71 0.965919
Target:  5'- aCGCgCGUGgGAGACAu-GGACAAGc -3'
miRNA:   3'- cGCGgGUACgCUCUGUuuUCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 155492 0.71 0.969212
Target:  5'- -aGCCgAgucUGaCGAGGCGGAGGACGAAGa -3'
miRNA:   3'- cgCGGgU---AC-GCUCUGUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 127319 0.71 0.969212
Target:  5'- gGCGCCCGUGgGcGAC-GGGGGCAc-- -3'
miRNA:   3'- -CGCGGGUACgCuCUGuUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 18427 0.7 0.981915
Target:  5'- cGCGCCCucucgcucggcGCGGGGuCGAAGGACGu-- -3'
miRNA:   3'- -CGCGGGua---------CGCUCU-GUUUUCUGUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.