miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24461 5' -48.4 NC_005264.1 + 68106 1.09 0.015244
Target:  5'- gGCGCCCAUGCGAGACAAAAGACAAAAc -3'
miRNA:   3'- -CGCGGGUACGCUCUGUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 1006 0.82 0.494413
Target:  5'- cGCGCCCGUGUG-GugGGGGGGCAGGGg -3'
miRNA:   3'- -CGCGGGUACGCuCugUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 45346 0.79 0.643967
Target:  5'- cGCGCCCGaGaCGAGGCGAAAGGgAGGAg -3'
miRNA:   3'- -CGCGGGUaC-GCUCUGUUUUCUgUUUU- -5'
24461 5' -48.4 NC_005264.1 + 61863 0.76 0.809716
Target:  5'- gGCGCUccaggCAUGgGAGGCAGAAGACGu-- -3'
miRNA:   3'- -CGCGG-----GUACgCUCUGUUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 53581 0.76 0.82805
Target:  5'- cGCGCCCGacGCGuGGCGAGuauuAGACGAAAa -3'
miRNA:   3'- -CGCGGGUa-CGCuCUGUUU----UCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 156693 0.73 0.912755
Target:  5'- -aGCCCGcGCGAGACccAGGACGGGc -3'
miRNA:   3'- cgCGGGUaCGCUCUGuuUUCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 133249 0.73 0.918927
Target:  5'- aGCGCCgAcGCGcaAGACAAAGGACGc-- -3'
miRNA:   3'- -CGCGGgUaCGC--UCUGUUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 14893 0.72 0.939405
Target:  5'- cGCGUCCAUGCuuauGGACGuggagcugccauucAAGGACAAGAu -3'
miRNA:   3'- -CGCGGGUACGc---UCUGU--------------UUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 128715 0.72 0.940903
Target:  5'- cGCGCCCGUcaccaGAGGCAgcGAAGGCAu-- -3'
miRNA:   3'- -CGCGGGUAcg---CUCUGU--UUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 159090 0.72 0.940903
Target:  5'- aGCGCCCcgGCG--GCAAGAGGCc--- -3'
miRNA:   3'- -CGCGGGuaCGCucUGUUUUCUGuuuu -5'
24461 5' -48.4 NC_005264.1 + 40063 0.72 0.940903
Target:  5'- aGCGCCCcgGCG--GCAAGAGGCc--- -3'
miRNA:   3'- -CGCGGGuaCGCucUGUUUUCUGuuuu -5'
24461 5' -48.4 NC_005264.1 + 16680 0.72 0.949834
Target:  5'- aCGUgCAUGCGAGGCAucgacacGAAGACGu-- -3'
miRNA:   3'- cGCGgGUACGCUCUGU-------UUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 67106 0.72 0.95457
Target:  5'- cGCGCCUAUGUaGGugGuacggaGAGGACAGAGu -3'
miRNA:   3'- -CGCGGGUACGcUCugU------UUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 35749 0.71 0.958604
Target:  5'- cGUGCCCGacUGCGgccgcgacgugGGugAAGAGGCGGAGg -3'
miRNA:   3'- -CGCGGGU--ACGC-----------UCugUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 154775 0.71 0.958604
Target:  5'- cGUGCCCGacUGCGgccgcgacgugGGugAAGAGGCGGAGg -3'
miRNA:   3'- -CGCGGGU--ACGC-----------UCugUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 142750 0.71 0.965919
Target:  5'- aCGCgCGUGgGAGACAu-GGACAAGc -3'
miRNA:   3'- cGCGgGUACgCUCUGUuuUCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 96050 0.71 0.967265
Target:  5'- -gGCCCAgGCGGGACcguguuaggaacgugGGAGGACGAGu -3'
miRNA:   3'- cgCGGGUaCGCUCUG---------------UUUUCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 8292 0.71 0.969212
Target:  5'- gGCGCCCGUGgGcGAC-GGGGGCAc-- -3'
miRNA:   3'- -CGCGGGUACgCuCUGuUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 36465 0.71 0.969212
Target:  5'- -aGCCgAgucUGaCGAGGCGGAGGACGAAGa -3'
miRNA:   3'- cgCGGgU---AC-GCUCUGUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 127319 0.71 0.969212
Target:  5'- gGCGCCCGUGgGcGAC-GGGGGCAc-- -3'
miRNA:   3'- -CGCGGGUACgCuCUGuUUUCUGUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.