miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24462 3' -64.9 NC_005264.1 + 8301 0.66 0.561964
Target:  5'- gGGCGaCGGGGGca-CCUGCgccGCGGCgucgCCGu -3'
miRNA:   3'- -CCGC-GUCCCCacaGGACG---CGCCG----GGC- -5'
24462 3' -64.9 NC_005264.1 + 32921 0.66 0.561964
Target:  5'- cGCGCAGGGGUc----GCGgGGCgCCGc -3'
miRNA:   3'- cCGCGUCCCCAcaggaCGCgCCG-GGC- -5'
24462 3' -64.9 NC_005264.1 + 127328 0.66 0.561964
Target:  5'- gGGCGaCGGGGGca-CCUGCgccGCGGCgucgCCGu -3'
miRNA:   3'- -CCGC-GUCCCCacaGGACG---CGCCG----GGC- -5'
24462 3' -64.9 NC_005264.1 + 116421 0.66 0.552577
Target:  5'- aGCGCAGGGcggcGUGcagCCUcGCGgCGGaCCUGg -3'
miRNA:   3'- cCGCGUCCC----CACa--GGA-CGC-GCC-GGGC- -5'
24462 3' -64.9 NC_005264.1 + 99186 0.66 0.552577
Target:  5'- cGGCGUAGacguGGG-GUCCU-CGCaGGCCUc -3'
miRNA:   3'- -CCGCGUC----CCCaCAGGAcGCG-CCGGGc -5'
24462 3' -64.9 NC_005264.1 + 48376 0.66 0.533952
Target:  5'- gGGCGCAgccgguagacuGGGGcGUCggGCgGCGGCCa- -3'
miRNA:   3'- -CCGCGU-----------CCCCaCAGgaCG-CGCCGGgc -5'
24462 3' -64.9 NC_005264.1 + 12328 0.66 0.533952
Target:  5'- aGCaCAGGGGUGU-CUGCucuCGGCuCCGc -3'
miRNA:   3'- cCGcGUCCCCACAgGACGc--GCCG-GGC- -5'
24462 3' -64.9 NC_005264.1 + 16156 0.66 0.524723
Target:  5'- cGCGCAGGGcGgcaaugccGcCCUGCGCGGaggUCGg -3'
miRNA:   3'- cCGCGUCCC-Ca-------CaGGACGCGCCg--GGC- -5'
24462 3' -64.9 NC_005264.1 + 101013 0.66 0.522884
Target:  5'- cGGCGCAGGcgagccaGGcacUGcCCgGCgaugcccGCGGCCCGg -3'
miRNA:   3'- -CCGCGUCC-------CC---ACaGGaCG-------CGCCGGGC- -5'
24462 3' -64.9 NC_005264.1 + 114676 0.66 0.521966
Target:  5'- --aGCGGGGGUGcagCCacgccgagcaggauUGCGCGGUCuCGu -3'
miRNA:   3'- ccgCGUCCCCACa--GG--------------ACGCGCCGG-GC- -5'
24462 3' -64.9 NC_005264.1 + 84637 0.66 0.515554
Target:  5'- cGUGCcccuGGcGGUGUCCguagcguauUGUGCGGCCg- -3'
miRNA:   3'- cCGCGu---CC-CCACAGG---------ACGCGCCGGgc -5'
24462 3' -64.9 NC_005264.1 + 107713 0.67 0.506452
Target:  5'- aGCGCAcggcGGGGUGUcgaacCCU-CGUGGCuuGg -3'
miRNA:   3'- cCGCGU----CCCCACA-----GGAcGCGCCGggC- -5'
24462 3' -64.9 NC_005264.1 + 1022 0.67 0.497419
Target:  5'- gGGgGCAGGGGccGUUCUGUauucucGCGGUUCu -3'
miRNA:   3'- -CCgCGUCCCCa-CAGGACG------CGCCGGGc -5'
24462 3' -64.9 NC_005264.1 + 123774 0.67 0.479574
Target:  5'- cGGCGUccGGGGGUGgaccgCC-GCGCGaacucggccaGUCCGa -3'
miRNA:   3'- -CCGCG--UCCCCACa----GGaCGCGC----------CGGGC- -5'
24462 3' -64.9 NC_005264.1 + 19425 0.67 0.479574
Target:  5'- aGGCGCcGGGuGUGgCC-GCGgGGCgCGg -3'
miRNA:   3'- -CCGCGuCCC-CACaGGaCGCgCCGgGC- -5'
24462 3' -64.9 NC_005264.1 + 4748 0.67 0.479574
Target:  5'- cGGCGUccGGGGGUGgaccgCC-GCGCGaacucggccaGUCCGa -3'
miRNA:   3'- -CCGCG--UCCCCACa----GGaCGCGC----------CGGGC- -5'
24462 3' -64.9 NC_005264.1 + 155949 0.67 0.462049
Target:  5'- cGCGCuGGGa----CUGCGCGGCUCGc -3'
miRNA:   3'- cCGCGuCCCcacagGACGCGCCGGGC- -5'
24462 3' -64.9 NC_005264.1 + 76302 0.68 0.444867
Target:  5'- gGGCGCGGGGG-Gg-CUGC-UGGCUCa -3'
miRNA:   3'- -CCGCGUCCCCaCagGACGcGCCGGGc -5'
24462 3' -64.9 NC_005264.1 + 129011 0.68 0.409181
Target:  5'- cGCGCAGGGGaauagcuacagccuUgccggcgagccgGUCCaaagcggcgUGCGCGGCUCGa -3'
miRNA:   3'- cCGCGUCCCC--------------A------------CAGG---------ACGCGCCGGGC- -5'
24462 3' -64.9 NC_005264.1 + 116468 0.68 0.403542
Target:  5'- cGCGUAucGGUGUCCUGCGC-GCCa- -3'
miRNA:   3'- cCGCGUccCCACAGGACGCGcCGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.