Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24462 | 3' | -64.9 | NC_005264.1 | + | 6987 | 0.76 | 0.128088 |
Target: 5'- uGGCGCGGGGuUGUcCCUGCggGCGGCgCCa -3' miRNA: 3'- -CCGCGUCCCcACA-GGACG--CGCCG-GGc -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 32921 | 0.66 | 0.561964 |
Target: 5'- cGCGCAGGGGUc----GCGgGGCgCCGc -3' miRNA: 3'- cCGCGUCCCCAcaggaCGCgCCG-GGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 127328 | 0.66 | 0.561964 |
Target: 5'- gGGCGaCGGGGGca-CCUGCgccGCGGCgucgCCGu -3' miRNA: 3'- -CCGC-GUCCCCacaGGACG---CGCCG----GGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 12328 | 0.66 | 0.533952 |
Target: 5'- aGCaCAGGGGUGU-CUGCucuCGGCuCCGc -3' miRNA: 3'- cCGcGUCCCCACAgGACGc--GCCG-GGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 84637 | 0.66 | 0.515554 |
Target: 5'- cGUGCcccuGGcGGUGUCCguagcguauUGUGCGGCCg- -3' miRNA: 3'- cCGCGu---CC-CCACAGG---------ACGCGCCGGgc -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 1022 | 0.67 | 0.497419 |
Target: 5'- gGGgGCAGGGGccGUUCUGUauucucGCGGUUCu -3' miRNA: 3'- -CCgCGUCCCCa-CAGGACG------CGCCGGGc -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 123774 | 0.67 | 0.479574 |
Target: 5'- cGGCGUccGGGGGUGgaccgCC-GCGCGaacucggccaGUCCGa -3' miRNA: 3'- -CCGCG--UCCCCACa----GGaCGCGC----------CGGGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 19425 | 0.67 | 0.479574 |
Target: 5'- aGGCGCcGGGuGUGgCC-GCGgGGCgCGg -3' miRNA: 3'- -CCGCGuCCC-CACaGGaCGCgCCGgGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 124929 | 0.69 | 0.379942 |
Target: 5'- -cUGCGGGGGgGUCUUGCuCGGCUCu -3' miRNA: 3'- ccGCGUCCCCaCAGGACGcGCCGGGc -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 159637 | 0.72 | 0.231025 |
Target: 5'- -aCGCAGGGG-GUCCUGCGaaauaaGCCCu -3' miRNA: 3'- ccGCGUCCCCaCAGGACGCgc----CGGGc -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 157206 | 0.71 | 0.264413 |
Target: 5'- cGCGCuguGGGGacaCCUagcgucGCGCGGCCCGa -3' miRNA: 3'- cCGCGu--CCCCacaGGA------CGCGCCGGGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 132483 | 0.71 | 0.270344 |
Target: 5'- cGGCGCcgaAGGGGc-UCCUGCGgGGaCUCGg -3' miRNA: 3'- -CCGCG---UCCCCacAGGACGCgCC-GGGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 158251 | 0.7 | 0.328575 |
Target: 5'- cGGCGCuggcGGGGaGggCCUGCGUucccGGCUCGg -3' miRNA: 3'- -CCGCGu---CCCCaCa-GGACGCG----CCGGGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 116983 | 0.69 | 0.352866 |
Target: 5'- cGGCGCGcagacucgaagucuuGGGGgcgGU-CUGCGCGGCgCa -3' miRNA: 3'- -CCGCGU---------------CCCCa--CAgGACGCGCCGgGc -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 20247 | 0.69 | 0.379942 |
Target: 5'- gGGUggGCAGGGGU-UgCgGCGCGGCCUc -3' miRNA: 3'- -CCG--CGUCCCCAcAgGaCGCGCCGGGc -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 67634 | 1.09 | 0.000565 |
Target: 5'- gGGCGCAGGGGUGUCCUGCGCGGCCCGu -3' miRNA: 3'- -CCGCGUCCCCACAGGACGCGCCGGGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 99186 | 0.66 | 0.552577 |
Target: 5'- cGGCGUAGacguGGG-GUCCU-CGCaGGCCUc -3' miRNA: 3'- -CCGCGUC----CCCaCAGGAcGCG-CCGGGc -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 116421 | 0.66 | 0.552577 |
Target: 5'- aGCGCAGGGcggcGUGcagCCUcGCGgCGGaCCUGg -3' miRNA: 3'- cCGCGUCCC----CACa--GGA-CGC-GCC-GGGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 48376 | 0.66 | 0.533952 |
Target: 5'- gGGCGCAgccgguagacuGGGGcGUCggGCgGCGGCCa- -3' miRNA: 3'- -CCGCGU-----------CCCCaCAGgaCG-CGCCGGgc -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 16156 | 0.66 | 0.524723 |
Target: 5'- cGCGCAGGGcGgcaaugccGcCCUGCGCGGaggUCGg -3' miRNA: 3'- cCGCGUCCC-Ca-------CaGGACGCGCCg--GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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