Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24462 | 3' | -64.9 | NC_005264.1 | + | 119504 | 0.7 | 0.314874 |
Target: 5'- uGCGCAGGGcGUGcUCCgagGCGgCaGCCCu -3' miRNA: 3'- cCGCGUCCC-CAC-AGGa--CGC-GcCGGGc -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 13456 | 0.71 | 0.270344 |
Target: 5'- cGGCGCcgaAGGGGc-UCCUGCGgGGaCUCGg -3' miRNA: 3'- -CCGCG---UCCCCacAGGACGCgCC-GGGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 38179 | 0.71 | 0.264413 |
Target: 5'- cGCGCuguGGGGacaCCUagcgucGCGCGGCCCGa -3' miRNA: 3'- cCGCGu--CCCCacaGGA------CGCGCCGGGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 77928 | 0.72 | 0.240107 |
Target: 5'- cGCGCcuGGcUcuucccgcccucccGUCCUGCGCGGCCCGc -3' miRNA: 3'- cCGCGucCCcA--------------CAGGACGCGCCGGGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 40610 | 0.72 | 0.231025 |
Target: 5'- -aCGCAGGGG-GUCCUGCGaaauaaGCCCu -3' miRNA: 3'- ccGCGUCCCCaCAGGACGCgc----CGGGc -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 129011 | 0.68 | 0.409181 |
Target: 5'- cGCGCAGGGGaauagcuacagccuUgccggcgagccgGUCCaaagcggcgUGCGCGGCUCGa -3' miRNA: 3'- cCGCGUCCCC--------------A------------CAGG---------ACGCGCCGGGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 76302 | 0.68 | 0.444867 |
Target: 5'- gGGCGCGGGGG-Gg-CUGC-UGGCUCa -3' miRNA: 3'- -CCGCGUCCCCaCagGACGcGCCGGGc -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 8301 | 0.66 | 0.561964 |
Target: 5'- gGGCGaCGGGGGca-CCUGCgccGCGGCgucgCCGu -3' miRNA: 3'- -CCGC-GUCCCCacaGGACG---CGCCG----GGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 99186 | 0.66 | 0.552577 |
Target: 5'- cGGCGUAGacguGGG-GUCCU-CGCaGGCCUc -3' miRNA: 3'- -CCGCGUC----CCCaCAGGAcGCG-CCGGGc -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 116421 | 0.66 | 0.552577 |
Target: 5'- aGCGCAGGGcggcGUGcagCCUcGCGgCGGaCCUGg -3' miRNA: 3'- cCGCGUCCC----CACa--GGA-CGC-GCC-GGGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 48376 | 0.66 | 0.533952 |
Target: 5'- gGGCGCAgccgguagacuGGGGcGUCggGCgGCGGCCa- -3' miRNA: 3'- -CCGCGU-----------CCCCaCAGgaCG-CGCCGGgc -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 16156 | 0.66 | 0.524723 |
Target: 5'- cGCGCAGGGcGgcaaugccGcCCUGCGCGGaggUCGg -3' miRNA: 3'- cCGCGUCCC-Ca-------CaGGACGCGCCg--GGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 101013 | 0.66 | 0.522884 |
Target: 5'- cGGCGCAGGcgagccaGGcacUGcCCgGCgaugcccGCGGCCCGg -3' miRNA: 3'- -CCGCGUCC-------CC---ACaGGaCG-------CGCCGGGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 114676 | 0.66 | 0.521966 |
Target: 5'- --aGCGGGGGUGcagCCacgccgagcaggauUGCGCGGUCuCGu -3' miRNA: 3'- ccgCGUCCCCACa--GG--------------ACGCGCCGG-GC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 107713 | 0.67 | 0.506452 |
Target: 5'- aGCGCAcggcGGGGUGUcgaacCCU-CGUGGCuuGg -3' miRNA: 3'- cCGCGU----CCCCACA-----GGAcGCGCCGggC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 4748 | 0.67 | 0.479574 |
Target: 5'- cGGCGUccGGGGGUGgaccgCC-GCGCGaacucggccaGUCCGa -3' miRNA: 3'- -CCGCG--UCCCCACa----GGaCGCGC----------CGGGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 155949 | 0.67 | 0.462049 |
Target: 5'- cGCGCuGGGa----CUGCGCGGCUCGc -3' miRNA: 3'- cCGCGuCCCcacagGACGCGCCGGGC- -5' |
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24462 | 3' | -64.9 | NC_005264.1 | + | 67634 | 1.09 | 0.000565 |
Target: 5'- gGGCGCAGGGGUGUCCUGCGCGGCCCGu -3' miRNA: 3'- -CCGCGUCCCCACAGGACGCGCCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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