miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24462 3' -64.9 NC_005264.1 + 94949 0.7 0.32167
Target:  5'- cGCGUcGGuGGUGggCCU-CGCGGCCCa -3'
miRNA:   3'- cCGCGuCC-CCACa-GGAcGCGCCGGGc -5'
24462 3' -64.9 NC_005264.1 + 99186 0.66 0.552577
Target:  5'- cGGCGUAGacguGGG-GUCCU-CGCaGGCCUc -3'
miRNA:   3'- -CCGCGUC----CCCaCAGGAcGCG-CCGGGc -5'
24462 3' -64.9 NC_005264.1 + 101013 0.66 0.522884
Target:  5'- cGGCGCAGGcgagccaGGcacUGcCCgGCgaugcccGCGGCCCGg -3'
miRNA:   3'- -CCGCGUCC-------CC---ACaGGaCG-------CGCCGGGC- -5'
24462 3' -64.9 NC_005264.1 + 107713 0.67 0.506452
Target:  5'- aGCGCAcggcGGGGUGUcgaacCCU-CGUGGCuuGg -3'
miRNA:   3'- cCGCGU----CCCCACA-----GGAcGCGCCGggC- -5'
24462 3' -64.9 NC_005264.1 + 114676 0.66 0.521966
Target:  5'- --aGCGGGGGUGcagCCacgccgagcaggauUGCGCGGUCuCGu -3'
miRNA:   3'- ccgCGUCCCCACa--GG--------------ACGCGCCGG-GC- -5'
24462 3' -64.9 NC_005264.1 + 116421 0.66 0.552577
Target:  5'- aGCGCAGGGcggcGUGcagCCUcGCGgCGGaCCUGg -3'
miRNA:   3'- cCGCGUCCC----CACa--GGA-CGC-GCC-GGGC- -5'
24462 3' -64.9 NC_005264.1 + 116468 0.68 0.403542
Target:  5'- cGCGUAucGGUGUCCUGCGC-GCCa- -3'
miRNA:   3'- cCGCGUccCCACAGGACGCGcCGGgc -5'
24462 3' -64.9 NC_005264.1 + 116983 0.69 0.352866
Target:  5'- cGGCGCGcagacucgaagucuuGGGGgcgGU-CUGCGCGGCgCa -3'
miRNA:   3'- -CCGCGU---------------CCCCa--CAgGACGCGCCGgGc -5'
24462 3' -64.9 NC_005264.1 + 119504 0.7 0.314874
Target:  5'- uGCGCAGGGcGUGcUCCgagGCGgCaGCCCu -3'
miRNA:   3'- cCGCGUCCC-CAC-AGGa--CGC-GcCGGGc -5'
24462 3' -64.9 NC_005264.1 + 123774 0.67 0.479574
Target:  5'- cGGCGUccGGGGGUGgaccgCC-GCGCGaacucggccaGUCCGa -3'
miRNA:   3'- -CCGCG--UCCCCACa----GGaCGCGC----------CGGGC- -5'
24462 3' -64.9 NC_005264.1 + 124929 0.69 0.379942
Target:  5'- -cUGCGGGGGgGUCUUGCuCGGCUCu -3'
miRNA:   3'- ccGCGUCCCCaCAGGACGcGCCGGGc -5'
24462 3' -64.9 NC_005264.1 + 127328 0.66 0.561964
Target:  5'- gGGCGaCGGGGGca-CCUGCgccGCGGCgucgCCGu -3'
miRNA:   3'- -CCGC-GUCCCCacaGGACG---CGCCG----GGC- -5'
24462 3' -64.9 NC_005264.1 + 129011 0.68 0.409181
Target:  5'- cGCGCAGGGGaauagcuacagccuUgccggcgagccgGUCCaaagcggcgUGCGCGGCUCGa -3'
miRNA:   3'- cCGCGUCCCC--------------A------------CAGG---------ACGCGCCGGGC- -5'
24462 3' -64.9 NC_005264.1 + 132483 0.71 0.270344
Target:  5'- cGGCGCcgaAGGGGc-UCCUGCGgGGaCUCGg -3'
miRNA:   3'- -CCGCG---UCCCCacAGGACGCgCC-GGGC- -5'
24462 3' -64.9 NC_005264.1 + 155949 0.67 0.462049
Target:  5'- cGCGCuGGGa----CUGCGCGGCUCGc -3'
miRNA:   3'- cCGCGuCCCcacagGACGCGCCGGGC- -5'
24462 3' -64.9 NC_005264.1 + 157206 0.71 0.264413
Target:  5'- cGCGCuguGGGGacaCCUagcgucGCGCGGCCCGa -3'
miRNA:   3'- cCGCGu--CCCCacaGGA------CGCGCCGGGC- -5'
24462 3' -64.9 NC_005264.1 + 158251 0.7 0.328575
Target:  5'- cGGCGCuggcGGGGaGggCCUGCGUucccGGCUCGg -3'
miRNA:   3'- -CCGCGu---CCCCaCa-GGACGCG----CCGGGC- -5'
24462 3' -64.9 NC_005264.1 + 159637 0.72 0.231025
Target:  5'- -aCGCAGGGG-GUCCUGCGaaauaaGCCCu -3'
miRNA:   3'- ccGCGUCCCCaCAGGACGCgc----CGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.