miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24466 3' -54.1 NC_005264.1 + 65392 1.12 0.003455
Target:  5'- gGCGCUACGUCUAUCAGAUCCGCGGCGg -3'
miRNA:   3'- -CGCGAUGCAGAUAGUCUAGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 58753 0.74 0.614927
Target:  5'- cCGCUGCG-CUAUCAGAggcgcaCgCGCGGUGg -3'
miRNA:   3'- cGCGAUGCaGAUAGUCUa-----G-GCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 97874 0.74 0.64562
Target:  5'- cGCGCUagAUGcUCUAgUCAGAgaauUCCGCGGCc -3'
miRNA:   3'- -CGCGA--UGC-AGAU-AGUCU----AGGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 18552 0.73 0.696447
Target:  5'- cGCGCcgGCGUCaGUCGGAgcggcaUCCGcCGGCc -3'
miRNA:   3'- -CGCGa-UGCAGaUAGUCU------AGGC-GCCGc -5'
24466 3' -54.1 NC_005264.1 + 85061 0.73 0.715468
Target:  5'- cGCGgUGCGUCUcugcggccgcgucGUCAGAUUCGgauaCGGCGc -3'
miRNA:   3'- -CGCgAUGCAGA-------------UAGUCUAGGC----GCCGC- -5'
24466 3' -54.1 NC_005264.1 + 98062 0.72 0.745922
Target:  5'- gGCGCUGCG-Cg--CAGAUCguuuCGCGGCc -3'
miRNA:   3'- -CGCGAUGCaGauaGUCUAG----GCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 17336 0.72 0.765079
Target:  5'- cCGUggACGUCUG-CAGugccuUCCGCGGCa -3'
miRNA:   3'- cGCGa-UGCAGAUaGUCu----AGGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 103027 0.71 0.774485
Target:  5'- aCGCgacccucACGUCUAcguaCGGcUCCGCGGCGg -3'
miRNA:   3'- cGCGa------UGCAGAUa---GUCuAGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 67283 0.7 0.836275
Target:  5'- cGCGCUagcGCGUCggcuUCgaaGGGUaUCGCGGCGg -3'
miRNA:   3'- -CGCGA---UGCAGau--AG---UCUA-GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 95487 0.7 0.839556
Target:  5'- gGCGCUACGUUUuccgcccucUUCGCGGCGg -3'
miRNA:   3'- -CGCGAUGCAGAuagucu---AGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 92499 0.7 0.844422
Target:  5'- gGCGgUGCGcCUGgccaucugUGGAUCCGCGGaCGa -3'
miRNA:   3'- -CGCgAUGCaGAUa-------GUCUAGGCGCC-GC- -5'
24466 3' -54.1 NC_005264.1 + 45256 0.7 0.844422
Target:  5'- aCGUgACGUCUguAUCAGAagauagcgagUCCGaCGGCGa -3'
miRNA:   3'- cGCGaUGCAGA--UAGUCU----------AGGC-GCCGC- -5'
24466 3' -54.1 NC_005264.1 + 13189 0.7 0.852378
Target:  5'- cGCGCUGCG-Cg--CGGAUCCGUcGCc -3'
miRNA:   3'- -CGCGAUGCaGauaGUCUAGGCGcCGc -5'
24466 3' -54.1 NC_005264.1 + 132216 0.7 0.852378
Target:  5'- cGCGCUGCG-Cg--CGGAUCCGUcGCc -3'
miRNA:   3'- -CGCGAUGCaGauaGUCUAGGCGcCGc -5'
24466 3' -54.1 NC_005264.1 + 151884 0.7 0.860133
Target:  5'- cGUGCUuCGUCaucGUCGGucCCGCGGUGg -3'
miRNA:   3'- -CGCGAuGCAGa--UAGUCuaGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 32858 0.7 0.860133
Target:  5'- cGUGCUuCGUCaucGUCGGucCCGCGGUGg -3'
miRNA:   3'- -CGCGAuGCAGa--UAGUCuaGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 94393 0.69 0.867683
Target:  5'- uCGUcccuCGUCUAugaUCAGG-CCGCGGCGc -3'
miRNA:   3'- cGCGau--GCAGAU---AGUCUaGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 128982 0.69 0.875021
Target:  5'- aCGCUccACGUUcuUCAGcucugCCGCGGCGc -3'
miRNA:   3'- cGCGA--UGCAGauAGUCua---GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 86616 0.69 0.882142
Target:  5'- aGCGCUACGUUgAUCAaccgCCGCaGCa -3'
miRNA:   3'- -CGCGAUGCAGaUAGUcua-GGCGcCGc -5'
24466 3' -54.1 NC_005264.1 + 116909 0.69 0.895714
Target:  5'- aGCGCUguucGCGguaccagUUGggagCAGAUugCCGCGGCGg -3'
miRNA:   3'- -CGCGA----UGCa------GAUa---GUCUA--GGCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.