miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24466 3' -54.1 NC_005264.1 + 2663 0.68 0.920078
Target:  5'- gGCaGCUcugACGUCcuaGUCGGGUCCGCaaGCGg -3'
miRNA:   3'- -CG-CGA---UGCAGa--UAGUCUAGGCGc-CGC- -5'
24466 3' -54.1 NC_005264.1 + 3580 0.68 0.913754
Target:  5'- uCGUgagGCGUcCUGUCAGGUgaguaggCCGUGGUGg -3'
miRNA:   3'- cGCGa--UGCA-GAUAGUCUA-------GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 7931 0.67 0.935856
Target:  5'- cGCGCguccacGCGUC-GUCcacggCCGCGGCGu -3'
miRNA:   3'- -CGCGa-----UGCAGaUAGucua-GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 13189 0.7 0.852378
Target:  5'- cGCGCUGCG-Cg--CGGAUCCGUcGCc -3'
miRNA:   3'- -CGCGAUGCaGauaGUCUAGGCGcCGc -5'
24466 3' -54.1 NC_005264.1 + 16398 0.66 0.970638
Target:  5'- uCGCaugUGCGcaaGUCAGAgCCGCGGCa -3'
miRNA:   3'- cGCG---AUGCagaUAGUCUaGGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 17336 0.72 0.765079
Target:  5'- cCGUggACGUCUG-CAGugccuUCCGCGGCa -3'
miRNA:   3'- cGCGa-UGCAGAUaGUCu----AGGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 18552 0.73 0.696447
Target:  5'- cGCGCcgGCGUCaGUCGGAgcggcaUCCGcCGGCc -3'
miRNA:   3'- -CGCGa-UGCAGaUAGUCU------AGGC-GCCGc -5'
24466 3' -54.1 NC_005264.1 + 26469 0.66 0.957426
Target:  5'- aUGCUACGUCaUAguagaCAGAgggCCcguGCGGCGc -3'
miRNA:   3'- cGCGAUGCAG-AUa----GUCUa--GG---CGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 29149 0.66 0.96446
Target:  5'- uGCGCgGCGgcaa--GGA-CCGCGGCGa -3'
miRNA:   3'- -CGCGaUGCagauagUCUaGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 29939 0.66 0.967344
Target:  5'- cGCGCUGCGcCUagccgGUCAaccGAUCCuaggaucGCGGUa -3'
miRNA:   3'- -CGCGAUGCaGA-----UAGU---CUAGG-------CGCCGc -5'
24466 3' -54.1 NC_005264.1 + 32858 0.7 0.860133
Target:  5'- cGUGCUuCGUCaucGUCGGucCCGCGGUGg -3'
miRNA:   3'- -CGCGAuGCAGa--UAGUCuaGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 37581 0.68 0.930835
Target:  5'- gGCGgcaaGUCUcgCGGcggCCGCGGCGg -3'
miRNA:   3'- -CGCgaugCAGAuaGUCua-GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 38251 0.68 0.925576
Target:  5'- gGCGCUguccGCGgugCUGUCGGugacgucaGUCCcggacgGCGGCGa -3'
miRNA:   3'- -CGCGA----UGCa--GAUAGUC--------UAGG------CGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 39183 0.66 0.970638
Target:  5'- gGCGCgcgAC-UCUAccgcgcaucgcuUCAGAgUCUGCGGCu -3'
miRNA:   3'- -CGCGa--UGcAGAU------------AGUCU-AGGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 45256 0.7 0.844422
Target:  5'- aCGUgACGUCUguAUCAGAagauagcgagUCCGaCGGCGa -3'
miRNA:   3'- cGCGaUGCAGA--UAGUCU----------AGGC-GCCGC- -5'
24466 3' -54.1 NC_005264.1 + 46438 0.66 0.961053
Target:  5'- uGCGCUcgACGUCggccugCGGcuuuUgCGCGGCGc -3'
miRNA:   3'- -CGCGA--UGCAGaua---GUCu---AgGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 46734 0.67 0.940638
Target:  5'- aGCGCUAUGUCUggcauguacAUCuguaccggguAGAUgggcaCGCGGCGc -3'
miRNA:   3'- -CGCGAUGCAGA---------UAG----------UCUAg----GCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 50290 0.67 0.940638
Target:  5'- uGCGUaGCGgCUAaCAGGUCgGCGGUu -3'
miRNA:   3'- -CGCGaUGCaGAUaGUCUAGgCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 55775 0.66 0.957426
Target:  5'- cGCGCUGaGUCUGcuuaacCAcGcUCCGCGGCu -3'
miRNA:   3'- -CGCGAUgCAGAUa-----GU-CuAGGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 57847 0.66 0.970348
Target:  5'- uGCGCUGCaaacgGUC-GUCAGcgCCagagacgGCGGCa -3'
miRNA:   3'- -CGCGAUG-----CAGaUAGUCuaGG-------CGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.