Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24466 | 3' | -54.1 | NC_005264.1 | + | 162802 | 0.67 | 0.949495 |
Target: 5'- aGCGCU-CGUUcgaacagcUAGggCCGCGGCGu -3' miRNA: 3'- -CGCGAuGCAGaua-----GUCuaGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 157278 | 0.68 | 0.925576 |
Target: 5'- gGCGCUguccGCGgugCUGUCGGugacgucaGUCCcggacgGCGGCGa -3' miRNA: 3'- -CGCGA----UGCa--GAUAGUC--------UAGG------CGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 156608 | 0.68 | 0.930835 |
Target: 5'- gGCGgcaaGUCUcgCGGcggCCGCGGCGg -3' miRNA: 3'- -CGCgaugCAGAuaGUCua-GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 156396 | 0.67 | 0.953575 |
Target: 5'- aGCGCgacgaaggAUGUCUAggguUCAGugcCUGCGGCu -3' miRNA: 3'- -CGCGa-------UGCAGAU----AGUCua-GGCGCCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 151884 | 0.7 | 0.860133 |
Target: 5'- cGUGCUuCGUCaucGUCGGucCCGCGGUGg -3' miRNA: 3'- -CGCGAuGCAGa--UAGUCuaGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 136464 | 0.66 | 0.961053 |
Target: 5'- cGCGCUcagagacgGCGcCgcgCAGccugCCGCGGCGc -3' miRNA: 3'- -CGCGA--------UGCaGauaGUCua--GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 133240 | 0.68 | 0.925576 |
Target: 5'- cGCGCUACG-CUucgAUCuGGAgCCGCaGGCa -3' miRNA: 3'- -CGCGAUGCaGA---UAG-UCUaGGCG-CCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 132216 | 0.7 | 0.852378 |
Target: 5'- cGCGCUGCG-Cg--CGGAUCCGUcGCc -3' miRNA: 3'- -CGCGAUGCaGauaGUCUAGGCGcCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 130273 | 0.68 | 0.930835 |
Target: 5'- uGCGCgACGUUgcggCGGcuaCCGCGGCa -3' miRNA: 3'- -CGCGaUGCAGaua-GUCua-GGCGCCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 129588 | 0.67 | 0.953575 |
Target: 5'- cGCGCUcugcagGCG-CUG-CGGcgCgGCGGCGa -3' miRNA: 3'- -CGCGA------UGCaGAUaGUCuaGgCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 128982 | 0.69 | 0.875021 |
Target: 5'- aCGCUccACGUUcuUCAGcucugCCGCGGCGc -3' miRNA: 3'- cGCGA--UGCAGauAGUCua---GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 128536 | 0.67 | 0.949495 |
Target: 5'- gGCGCUAUaGUUccUguGAcccacguauauuUCCGCGGCGg -3' miRNA: 3'- -CGCGAUG-CAGauAguCU------------AGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 117397 | 0.66 | 0.957051 |
Target: 5'- cGUGUcgucuaugacuauUACG-CUAUCGGGgcugUCGCGGCGc -3' miRNA: 3'- -CGCG-------------AUGCaGAUAGUCUa---GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 116909 | 0.69 | 0.895714 |
Target: 5'- aGCGCUguucGCGguaccagUUGggagCAGAUugCCGCGGCGg -3' miRNA: 3'- -CGCGA----UGCa------GAUa---GUCUA--GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 111486 | 0.66 | 0.967653 |
Target: 5'- aCGCUGCGcCcuUCcuGUCgGCGGCGa -3' miRNA: 3'- cGCGAUGCaGauAGucUAGgCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 103027 | 0.71 | 0.774485 |
Target: 5'- aCGCgacccucACGUCUAcguaCGGcUCCGCGGCGg -3' miRNA: 3'- cGCGa------UGCAGAUa---GUCuAGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 102714 | 0.68 | 0.925576 |
Target: 5'- uUGCUACGcCacggUGUCGGAaaaagUCGCGGCGu -3' miRNA: 3'- cGCGAUGCaG----AUAGUCUa----GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 100039 | 0.67 | 0.945184 |
Target: 5'- cGCuGCUGCGUCcgguggaaaaaUAUCAgGGUuuGCGGgGc -3' miRNA: 3'- -CG-CGAUGCAG-----------AUAGU-CUAggCGCCgC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 99187 | 0.66 | 0.96446 |
Target: 5'- gGCGUagACGUggggucCUcgCAGGccUCCGCGGCc -3' miRNA: 3'- -CGCGa-UGCA------GAuaGUCU--AGGCGCCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 98062 | 0.72 | 0.745922 |
Target: 5'- gGCGCUGCG-Cg--CAGAUCguuuCGCGGCc -3' miRNA: 3'- -CGCGAUGCaGauaGUCUAG----GCGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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