Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24466 | 3' | -54.1 | NC_005264.1 | + | 57961 | 0.66 | 0.970638 |
Target: 5'- cGUGCUugugccuauCGUC-AUCGGAgUCCccgcGCGGCGg -3' miRNA: 3'- -CGCGAu--------GCAGaUAGUCU-AGG----CGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 58753 | 0.74 | 0.614927 |
Target: 5'- cCGCUGCG-CUAUCAGAggcgcaCgCGCGGUGg -3' miRNA: 3'- cGCGAUGCaGAUAGUCUa-----G-GCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 60280 | 0.66 | 0.968872 |
Target: 5'- aGCGCcGCGUCgggcaugacguacUCGGAUUCG-GGCGc -3' miRNA: 3'- -CGCGaUGCAGau-----------AGUCUAGGCgCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 65392 | 1.12 | 0.003455 |
Target: 5'- gGCGCUACGUCUAUCAGAUCCGCGGCGg -3' miRNA: 3'- -CGCGAUGCAGAUAGUCUAGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 67283 | 0.7 | 0.836275 |
Target: 5'- cGCGCUagcGCGUCggcuUCgaaGGGUaUCGCGGCGg -3' miRNA: 3'- -CGCGA---UGCAGau--AG---UCUA-GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 69959 | 0.66 | 0.957426 |
Target: 5'- uCGCUGaugCUGUUuu-UCCGCGGCGu -3' miRNA: 3'- cGCGAUgcaGAUAGucuAGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 70727 | 0.67 | 0.949495 |
Target: 5'- aCGCUGCG-CUGUguGccgCCGCaGCGa -3' miRNA: 3'- cGCGAUGCaGAUAguCua-GGCGcCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 75096 | 0.66 | 0.970638 |
Target: 5'- uGCGCUAC-UUgacgCAGucgcgCUGCGGCGa -3' miRNA: 3'- -CGCGAUGcAGaua-GUCua---GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 77285 | 0.67 | 0.940638 |
Target: 5'- cGCGCUcgaacgaauccaACGUCagcuUCAGGUCgCG-GGCGa -3' miRNA: 3'- -CGCGA------------UGCAGau--AGUCUAG-GCgCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 83231 | 0.67 | 0.940638 |
Target: 5'- uGCGCguggGCGUCUAggccgccgCuGAUgCGCuGGCGc -3' miRNA: 3'- -CGCGa---UGCAGAUa-------GuCUAgGCG-CCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 85061 | 0.73 | 0.715468 |
Target: 5'- cGCGgUGCGUCUcugcggccgcgucGUCAGAUUCGgauaCGGCGc -3' miRNA: 3'- -CGCgAUGCAGA-------------UAGUCUAGGC----GCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 86616 | 0.69 | 0.882142 |
Target: 5'- aGCGCUACGUUgAUCAaccgCCGCaGCa -3' miRNA: 3'- -CGCGAUGCAGaUAGUcua-GGCGcCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 92499 | 0.7 | 0.844422 |
Target: 5'- gGCGgUGCGcCUGgccaucugUGGAUCCGCGGaCGa -3' miRNA: 3'- -CGCgAUGCaGAUa-------GUCUAGGCGCC-GC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 93067 | 0.68 | 0.920078 |
Target: 5'- cUGCUGCGgga---GGggCCGCGGCGa -3' miRNA: 3'- cGCGAUGCagauagUCuaGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 94393 | 0.69 | 0.867683 |
Target: 5'- uCGUcccuCGUCUAugaUCAGG-CCGCGGCGc -3' miRNA: 3'- cGCGau--GCAGAU---AGUCUaGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 95487 | 0.7 | 0.839556 |
Target: 5'- gGCGCUACGUUUuccgcccucUUCGCGGCGg -3' miRNA: 3'- -CGCGAUGCAGAuagucu---AGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 97874 | 0.74 | 0.64562 |
Target: 5'- cGCGCUagAUGcUCUAgUCAGAgaauUCCGCGGCc -3' miRNA: 3'- -CGCGA--UGC-AGAU-AGUCU----AGGCGCCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 98062 | 0.72 | 0.745922 |
Target: 5'- gGCGCUGCG-Cg--CAGAUCguuuCGCGGCc -3' miRNA: 3'- -CGCGAUGCaGauaGUCUAG----GCGCCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 99187 | 0.66 | 0.96446 |
Target: 5'- gGCGUagACGUggggucCUcgCAGGccUCCGCGGCc -3' miRNA: 3'- -CGCGa-UGCA------GAuaGUCU--AGGCGCCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 100039 | 0.67 | 0.945184 |
Target: 5'- cGCuGCUGCGUCcgguggaaaaaUAUCAgGGUuuGCGGgGc -3' miRNA: 3'- -CG-CGAUGCAG-----------AUAGU-CUAggCGCCgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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