Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24466 | 3' | -54.1 | NC_005264.1 | + | 92499 | 0.7 | 0.844422 |
Target: 5'- gGCGgUGCGcCUGgccaucugUGGAUCCGCGGaCGa -3' miRNA: 3'- -CGCgAUGCaGAUa-------GUCUAGGCGCC-GC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 132216 | 0.7 | 0.852378 |
Target: 5'- cGCGCUGCG-Cg--CGGAUCCGUcGCc -3' miRNA: 3'- -CGCGAUGCaGauaGUCUAGGCGcCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 151884 | 0.7 | 0.860133 |
Target: 5'- cGUGCUuCGUCaucGUCGGucCCGCGGUGg -3' miRNA: 3'- -CGCGAuGCAGa--UAGUCuaGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 86616 | 0.69 | 0.882142 |
Target: 5'- aGCGCUACGUUgAUCAaccgCCGCaGCa -3' miRNA: 3'- -CGCGAUGCAGaUAGUcua-GGCGcCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 3580 | 0.68 | 0.913754 |
Target: 5'- uCGUgagGCGUcCUGUCAGGUgaguaggCCGUGGUGg -3' miRNA: 3'- cGCGa--UGCA-GAUAGUCUA-------GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 93067 | 0.68 | 0.920078 |
Target: 5'- cUGCUGCGgga---GGggCCGCGGCGa -3' miRNA: 3'- cGCGAUGCagauagUCuaGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 2663 | 0.68 | 0.920078 |
Target: 5'- gGCaGCUcugACGUCcuaGUCGGGUCCGCaaGCGg -3' miRNA: 3'- -CG-CGA---UGCAGa--UAGUCUAGGCGc-CGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 162802 | 0.67 | 0.949495 |
Target: 5'- aGCGCU-CGUUcgaacagcUAGggCCGCGGCGu -3' miRNA: 3'- -CGCGAuGCAGaua-----GUCuaGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 70727 | 0.67 | 0.949495 |
Target: 5'- aCGCUGCG-CUGUguGccgCCGCaGCGa -3' miRNA: 3'- cGCGAUGCaGAUAguCua-GGCGcCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 100039 | 0.67 | 0.945184 |
Target: 5'- cGCuGCUGCGUCcgguggaaaaaUAUCAgGGUuuGCGGgGc -3' miRNA: 3'- -CG-CGAUGCAG-----------AUAGU-CUAggCGCCgC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 77285 | 0.67 | 0.940638 |
Target: 5'- cGCGCUcgaacgaauccaACGUCagcuUCAGGUCgCG-GGCGa -3' miRNA: 3'- -CGCGA------------UGCAGau--AGUCUAG-GCgCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 83231 | 0.67 | 0.940638 |
Target: 5'- uGCGCguggGCGUCUAggccgccgCuGAUgCGCuGGCGc -3' miRNA: 3'- -CGCGa---UGCAGAUa-------GuCUAgGCG-CCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 128536 | 0.67 | 0.949495 |
Target: 5'- gGCGCUAUaGUUccUguGAcccacguauauuUCCGCGGCGg -3' miRNA: 3'- -CGCGAUG-CAGauAguCU------------AGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 156396 | 0.67 | 0.953575 |
Target: 5'- aGCGCgacgaaggAUGUCUAggguUCAGugcCUGCGGCu -3' miRNA: 3'- -CGCGa-------UGCAGAU----AGUCua-GGCGCCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 129588 | 0.67 | 0.953575 |
Target: 5'- cGCGCUcugcagGCG-CUG-CGGcgCgGCGGCGa -3' miRNA: 3'- -CGCGA------UGCaGAUaGUCuaGgCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 99187 | 0.66 | 0.96446 |
Target: 5'- gGCGUagACGUggggucCUcgCAGGccUCCGCGGCc -3' miRNA: 3'- -CGCGa-UGCA------GAuaGUCU--AGGCGCCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 29149 | 0.66 | 0.96446 |
Target: 5'- uGCGCgGCGgcaa--GGA-CCGCGGCGa -3' miRNA: 3'- -CGCGaUGCagauagUCUaGGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 57847 | 0.66 | 0.970348 |
Target: 5'- uGCGCUGCaaacgGUC-GUCAGcgCCagagacgGCGGCa -3' miRNA: 3'- -CGCGAUG-----CAGaUAGUCuaGG-------CGCCGc -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 75096 | 0.66 | 0.970638 |
Target: 5'- uGCGCUAC-UUgacgCAGucgcgCUGCGGCGa -3' miRNA: 3'- -CGCGAUGcAGaua-GUCua---GGCGCCGC- -5' |
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24466 | 3' | -54.1 | NC_005264.1 | + | 65392 | 1.12 | 0.003455 |
Target: 5'- gGCGCUACGUCUAUCAGAUCCGCGGCGg -3' miRNA: 3'- -CGCGAUGCAGAUAGUCUAGGCGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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