miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24466 3' -54.1 NC_005264.1 + 46734 0.67 0.940638
Target:  5'- aGCGCUAUGUCUggcauguacAUCuguaccggguAGAUgggcaCGCGGCGc -3'
miRNA:   3'- -CGCGAUGCAGA---------UAG----------UCUAg----GCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 70727 0.67 0.949495
Target:  5'- aCGCUGCG-CUGUguGccgCCGCaGCGa -3'
miRNA:   3'- cGCGAUGCaGAUAguCua-GGCGcCGC- -5'
24466 3' -54.1 NC_005264.1 + 128536 0.67 0.949495
Target:  5'- gGCGCUAUaGUUccUguGAcccacguauauuUCCGCGGCGg -3'
miRNA:   3'- -CGCGAUG-CAGauAguCU------------AGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 156396 0.67 0.953575
Target:  5'- aGCGCgacgaaggAUGUCUAggguUCAGugcCUGCGGCu -3'
miRNA:   3'- -CGCGa-------UGCAGAU----AGUCua-GGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 50290 0.67 0.940638
Target:  5'- uGCGUaGCGgCUAaCAGGUCgGCGGUu -3'
miRNA:   3'- -CGCGaUGCaGAUaGUCUAGgCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 162802 0.67 0.949495
Target:  5'- aGCGCU-CGUUcgaacagcUAGggCCGCGGCGu -3'
miRNA:   3'- -CGCGAuGCAGaua-----GUCuaGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 7931 0.67 0.935856
Target:  5'- cGCGCguccacGCGUC-GUCcacggCCGCGGCGu -3'
miRNA:   3'- -CGCGa-----UGCAGaUAGucua-GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 37581 0.68 0.930835
Target:  5'- gGCGgcaaGUCUcgCGGcggCCGCGGCGg -3'
miRNA:   3'- -CGCgaugCAGAuaGUCua-GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 133240 0.68 0.925576
Target:  5'- cGCGCUACG-CUucgAUCuGGAgCCGCaGGCa -3'
miRNA:   3'- -CGCGAUGCaGA---UAG-UCUaGGCG-CCGc -5'
24466 3' -54.1 NC_005264.1 + 102714 0.68 0.925576
Target:  5'- uUGCUACGcCacggUGUCGGAaaaagUCGCGGCGu -3'
miRNA:   3'- cGCGAUGCaG----AUAGUCUa----GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 93067 0.68 0.920078
Target:  5'- cUGCUGCGgga---GGggCCGCGGCGa -3'
miRNA:   3'- cGCGAUGCagauagUCuaGGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 38251 0.68 0.925576
Target:  5'- gGCGCUguccGCGgugCUGUCGGugacgucaGUCCcggacgGCGGCGa -3'
miRNA:   3'- -CGCGA----UGCa--GAUAGUC--------UAGG------CGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 3580 0.68 0.913754
Target:  5'- uCGUgagGCGUcCUGUCAGGUgaguaggCCGUGGUGg -3'
miRNA:   3'- cGCGa--UGCA-GAUAGUCUA-------GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 2663 0.68 0.920078
Target:  5'- gGCaGCUcugACGUCcuaGUCGGGUCCGCaaGCGg -3'
miRNA:   3'- -CG-CGA---UGCAGa--UAGUCUAGGCGc-CGC- -5'
24466 3' -54.1 NC_005264.1 + 157278 0.68 0.925576
Target:  5'- gGCGCUguccGCGgugCUGUCGGugacgucaGUCCcggacgGCGGCGa -3'
miRNA:   3'- -CGCGA----UGCa--GAUAGUC--------UAGG------CGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 156608 0.68 0.930835
Target:  5'- gGCGgcaaGUCUcgCGGcggCCGCGGCGg -3'
miRNA:   3'- -CGCgaugCAGAuaGUCua-GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 130273 0.68 0.930835
Target:  5'- uGCGCgACGUUgcggCGGcuaCCGCGGCa -3'
miRNA:   3'- -CGCGaUGCAGaua-GUCua-GGCGCCGc -5'
24466 3' -54.1 NC_005264.1 + 86616 0.69 0.882142
Target:  5'- aGCGCUACGUUgAUCAaccgCCGCaGCa -3'
miRNA:   3'- -CGCGAUGCAGaUAGUcua-GGCGcCGc -5'
24466 3' -54.1 NC_005264.1 + 128982 0.69 0.875021
Target:  5'- aCGCUccACGUUcuUCAGcucugCCGCGGCGc -3'
miRNA:   3'- cGCGA--UGCAGauAGUCua---GGCGCCGC- -5'
24466 3' -54.1 NC_005264.1 + 116909 0.69 0.895714
Target:  5'- aGCGCUguucGCGguaccagUUGggagCAGAUugCCGCGGCGg -3'
miRNA:   3'- -CGCGA----UGCa------GAUa---GUCUA--GGCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.