miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24466 5' -55.2 NC_005264.1 + 130857 0.66 0.937438
Target:  5'- uGGCGCUguagCGCgcaUCGGACACGCGgcccgUCGCc -3'
miRNA:   3'- -UCGCGA----GUGac-GGCUUGUGUGC-----AGCG- -5'
24466 5' -55.2 NC_005264.1 + 11357 0.66 0.937438
Target:  5'- uGCGCUaucCUGUCGuucuugcggaagAACGCggccGCGUCGCg -3'
miRNA:   3'- uCGCGAgu-GACGGC------------UUGUG----UGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 38175 0.66 0.932502
Target:  5'- -cCGCcgCGCUGUgGgGACACcuaGCGUCGCg -3'
miRNA:   3'- ucGCGa-GUGACGgC-UUGUG---UGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 72064 0.66 0.932502
Target:  5'- aGGCgGCaaGCUgGCCGAcgACguGCugGUCGCg -3'
miRNA:   3'- -UCG-CGagUGA-CGGCU--UG--UGugCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 35011 0.66 0.932502
Target:  5'- cGGCGCUCGaaGagGAGCGCugGcCGUc -3'
miRNA:   3'- -UCGCGAGUgaCggCUUGUGugCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 110379 0.66 0.932502
Target:  5'- uAGCGUUUuCUGCUacGCGCACGgCGUc -3'
miRNA:   3'- -UCGCGAGuGACGGcuUGUGUGCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 115204 0.66 0.932502
Target:  5'- cGUGCUCcucUUGCCcgccaGAACAUAUGUaCGCg -3'
miRNA:   3'- uCGCGAGu--GACGG-----CUUGUGUGCA-GCG- -5'
24466 5' -55.2 NC_005264.1 + 154038 0.66 0.932502
Target:  5'- cGGCGCUCGaaGagGAGCGCugGcCGUc -3'
miRNA:   3'- -UCGCGAGUgaCggCUUGUGugCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 157202 0.66 0.932502
Target:  5'- -cCGCcgCGCUGUgGgGACACcuaGCGUCGCg -3'
miRNA:   3'- ucGCGa-GUGACGgC-UUGUG---UGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 84135 0.66 0.927857
Target:  5'- cGGCaGCUCGCgagccccgggaagugGUCGcAGCGCGCG-CGCc -3'
miRNA:   3'- -UCG-CGAGUGa--------------CGGC-UUGUGUGCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 2613 0.66 0.927329
Target:  5'- aGGCGCga---GCCGAGCAgGCGggGCg -3'
miRNA:   3'- -UCGCGagugaCGGCUUGUgUGCagCG- -5'
24466 5' -55.2 NC_005264.1 + 55617 0.66 0.927329
Target:  5'- cGCgGCUgGC-GCCGAaugccaaccGCGCGCGcCGCc -3'
miRNA:   3'- uCG-CGAgUGaCGGCU---------UGUGUGCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 142780 0.66 0.927329
Target:  5'- -uUGCUCGCUacGCgGGGC-CGCGUgGCg -3'
miRNA:   3'- ucGCGAGUGA--CGgCUUGuGUGCAgCG- -5'
24466 5' -55.2 NC_005264.1 + 126123 0.66 0.927329
Target:  5'- uGCGCggcgGCUgaGCCGAugGCACuugCGCg -3'
miRNA:   3'- uCGCGag--UGA--CGGCUugUGUGca-GCG- -5'
24466 5' -55.2 NC_005264.1 + 119287 0.66 0.927329
Target:  5'- cGGuUGCUCGCggugGCUGGgcagcuGCAgACGUUGCu -3'
miRNA:   3'- -UC-GCGAGUGa---CGGCU------UGUgUGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 2849 0.66 0.927329
Target:  5'- cGCGCUCGC-GCCGu-CGCcCGcUGCg -3'
miRNA:   3'- uCGCGAGUGaCGGCuuGUGuGCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 106253 0.66 0.927329
Target:  5'- aGGCGCUCGC-GCCu-GCugACGgCGg -3'
miRNA:   3'- -UCGCGAGUGaCGGcuUGugUGCaGCg -5'
24466 5' -55.2 NC_005264.1 + 121640 0.66 0.927329
Target:  5'- aGGCGCga---GCCGAGCAgGCGggGCg -3'
miRNA:   3'- -UCGCGagugaCGGCUUGUgUGCagCG- -5'
24466 5' -55.2 NC_005264.1 + 121875 0.66 0.927329
Target:  5'- cGCGCUCGC-GCCGu-CGCcCGcUGCg -3'
miRNA:   3'- uCGCGAGUGaCGGCuuGUGuGCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 114031 0.66 0.927329
Target:  5'- uGCGCUcCGCUGUgGGaaACGCGagGUCGUu -3'
miRNA:   3'- uCGCGA-GUGACGgCU--UGUGUg-CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.