miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24466 5' -55.2 NC_005264.1 + 22714 0.67 0.92411
Target:  5'- -cCGCUCGCUgaacgggaagucaacGCUGAAgacCAC-CGUCGCa -3'
miRNA:   3'- ucGCGAGUGA---------------CGGCUU---GUGuGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 23026 0.68 0.8845
Target:  5'- cGCGUUucguccCGCgacgGCCGAcgGCACGCGUuCGUg -3'
miRNA:   3'- uCGCGA------GUGa---CGGCU--UGUGUGCA-GCG- -5'
24466 5' -55.2 NC_005264.1 + 23399 0.72 0.679981
Target:  5'- cGCcCUCuugugACgGCCGAGCACGCGUaCGCc -3'
miRNA:   3'- uCGcGAG-----UGaCGGCUUGUGUGCA-GCG- -5'
24466 5' -55.2 NC_005264.1 + 25928 0.69 0.805038
Target:  5'- aAGCgGCUgCACUGCaCGAcggGCuCACGUaCGCg -3'
miRNA:   3'- -UCG-CGA-GUGACG-GCU---UGuGUGCA-GCG- -5'
24466 5' -55.2 NC_005264.1 + 26360 0.66 0.9466
Target:  5'- uGGCGUUC-CgGCCGuAugACGagaggaGUCGCg -3'
miRNA:   3'- -UCGCGAGuGaCGGC-UugUGUg-----CAGCG- -5'
24466 5' -55.2 NC_005264.1 + 28043 0.68 0.855067
Target:  5'- cGGCGCgCGCgacGCCGggUAaaaGCG-CGCg -3'
miRNA:   3'- -UCGCGaGUGa--CGGCuuGUg--UGCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 29267 0.67 0.910379
Target:  5'- cGCGCagAUUGuuGGACuguGCGCGggCGCg -3'
miRNA:   3'- uCGCGagUGACggCUUG---UGUGCa-GCG- -5'
24466 5' -55.2 NC_005264.1 + 31881 0.71 0.720088
Target:  5'- cGGCGCaCGCcuUGUCGAuGCugACGUUGCg -3'
miRNA:   3'- -UCGCGaGUG--ACGGCU-UGugUGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 32983 0.67 0.910379
Target:  5'- cGgGCUCGCgcauaucGCCaucGGGCGCugGUCGg -3'
miRNA:   3'- uCgCGAGUGa------CGG---CUUGUGugCAGCg -5'
24466 5' -55.2 NC_005264.1 + 33696 0.74 0.538032
Target:  5'- cGCGCaUCGCU-CCGAGC-CGCGUCuGCg -3'
miRNA:   3'- uCGCG-AGUGAcGGCUUGuGUGCAG-CG- -5'
24466 5' -55.2 NC_005264.1 + 34312 0.66 0.9466
Target:  5'- gGGCGC-CGC-GCCuGACGCugGcugacUCGCu -3'
miRNA:   3'- -UCGCGaGUGaCGGcUUGUGugC-----AGCG- -5'
24466 5' -55.2 NC_005264.1 + 35011 0.66 0.932502
Target:  5'- cGGCGCUCGaaGagGAGCGCugGcCGUc -3'
miRNA:   3'- -UCGCGAGUgaCggCUUGUGugCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 36262 0.67 0.890642
Target:  5'- uGGCGCgauCUGCCGAagaguggAC-CACGucuUCGCg -3'
miRNA:   3'- -UCGCGaguGACGGCU-------UGuGUGC---AGCG- -5'
24466 5' -55.2 NC_005264.1 + 36747 0.72 0.649456
Target:  5'- cAGCGCgacggCGCcgGCCG-GCGC-CGUCGCc -3'
miRNA:   3'- -UCGCGa----GUGa-CGGCuUGUGuGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 37270 0.66 0.9466
Target:  5'- aGGCGCUC-CUGCCGAA-GCccccUGcCGCc -3'
miRNA:   3'- -UCGCGAGuGACGGCUUgUGu---GCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 38175 0.66 0.932502
Target:  5'- -cCGCcgCGCUGUgGgGACACcuaGCGUCGCg -3'
miRNA:   3'- ucGCGa-GUGACGgC-UUGUG---UGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 40245 0.67 0.918555
Target:  5'- uGGCGUUacgcggaggaaguggCACgagagaUGCUGGACGCcgccGCGUCGCg -3'
miRNA:   3'- -UCGCGA---------------GUG------ACGGCUUGUG----UGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 40679 0.66 0.942136
Target:  5'- uGGCGCcguUCGgcGUCGAGCACGCGUauaGUu -3'
miRNA:   3'- -UCGCG---AGUgaCGGCUUGUGUGCAg--CG- -5'
24466 5' -55.2 NC_005264.1 + 46468 0.71 0.739727
Target:  5'- cGGCGCUCuuugcCUGUgGAGuCGCGgGUUGCg -3'
miRNA:   3'- -UCGCGAGu----GACGgCUU-GUGUgCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 46867 0.67 0.8979
Target:  5'- uGGCGUUCAgcguccCUGUCGGGCGC-CG-CGUa -3'
miRNA:   3'- -UCGCGAGU------GACGGCUUGUGuGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.