miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24466 5' -55.2 NC_005264.1 + 797 0.66 0.937438
Target:  5'- uAGCGCUCcaguACgGCUGggUGCGCGgccgGCu -3'
miRNA:   3'- -UCGCGAG----UGaCGGCuuGUGUGCag--CG- -5'
24466 5' -55.2 NC_005264.1 + 2613 0.66 0.927329
Target:  5'- aGGCGCga---GCCGAGCAgGCGggGCg -3'
miRNA:   3'- -UCGCGagugaCGGCUUGUgUGCagCG- -5'
24466 5' -55.2 NC_005264.1 + 2849 0.66 0.927329
Target:  5'- cGCGCUCGC-GCCGu-CGCcCGcUGCg -3'
miRNA:   3'- uCGCGAGUGaCGGCuuGUGuGCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 3463 0.77 0.398959
Target:  5'- uGGCGCcCGgUGCCGcauccacgauguGGCACGCGUCGUg -3'
miRNA:   3'- -UCGCGaGUgACGGC------------UUGUGUGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 4329 0.8 0.283764
Target:  5'- cAGCGCagGCcugccccuggcgGCUGAGCGCGCGUCGCa -3'
miRNA:   3'- -UCGCGagUGa-----------CGGCUUGUGUGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 5185 0.69 0.830027
Target:  5'- aGGCcCUCGCgGCCGAaacuucggaagccGCgaACACGUUGCu -3'
miRNA:   3'- -UCGcGAGUGaCGGCU-------------UG--UGUGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 6160 0.69 0.847191
Target:  5'- cGCGCaUCGCgUGCaCGAugugggGCACGCcgGUCGCc -3'
miRNA:   3'- uCGCG-AGUG-ACG-GCU------UGUGUG--CAGCG- -5'
24466 5' -55.2 NC_005264.1 + 6161 0.67 0.891314
Target:  5'- cGCGCggGCUGUacaacAGCgACGCGUCGCu -3'
miRNA:   3'- uCGCGagUGACGgc---UUG-UGUGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 6927 0.67 0.910379
Target:  5'- gGGCGCg-AUUGUCuuGAGCuaAUACGUCGCg -3'
miRNA:   3'- -UCGCGagUGACGG--CUUG--UGUGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 7059 0.69 0.830863
Target:  5'- cGGCGacggCGCcgGCCG-GCGC-CGUCGCg -3'
miRNA:   3'- -UCGCga--GUGa-CGGCuUGUGuGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 8822 0.72 0.659656
Target:  5'- cGcCGCUCGCgGCacgGAACACgacaaACGUCGCg -3'
miRNA:   3'- uC-GCGAGUGaCGg--CUUGUG-----UGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 9548 0.73 0.636177
Target:  5'- uGuCGCUCGCaGCCGGugGCggcuagcagguaaaACGUCGCc -3'
miRNA:   3'- uC-GCGAGUGaCGGCUugUG--------------UGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 11357 0.66 0.937438
Target:  5'- uGCGCUaucCUGUCGuucuugcggaagAACGCggccGCGUCGCg -3'
miRNA:   3'- uCGCGAgu-GACGGC------------UUGUG----UGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 11831 0.66 0.937438
Target:  5'- uGGCGCUguagCGCgcaUCGGACACGCGgcccgUCGCc -3'
miRNA:   3'- -UCGCGA----GUGac-GGCUUGUGUGC-----AGCG- -5'
24466 5' -55.2 NC_005264.1 + 13421 0.67 0.921916
Target:  5'- cGGCGCgcgaccgcCGCcGCCGAG-ACGCGaCGCg -3'
miRNA:   3'- -UCGCGa-------GUGaCGGCUUgUGUGCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 14338 0.71 0.749411
Target:  5'- cGGCGCUCGCcGCC-AACGCGaccagCGCg -3'
miRNA:   3'- -UCGCGAGUGaCGGcUUGUGUgca--GCG- -5'
24466 5' -55.2 NC_005264.1 + 18059 0.69 0.839121
Target:  5'- cGGCGC-CGCgaGCCaGGGCGCGCGg-GCa -3'
miRNA:   3'- -UCGCGaGUGa-CGG-CUUGUGUGCagCG- -5'
24466 5' -55.2 NC_005264.1 + 19907 0.67 0.92411
Target:  5'- gGGUGCUUugUgguggcGCCGugccaguaccucgagGACGCAuCGUCGCc -3'
miRNA:   3'- -UCGCGAGugA------CGGC---------------UUGUGU-GCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 20292 0.71 0.739727
Target:  5'- cGCGCUUGCgGCCccgagGGGCugAgGUCGCu -3'
miRNA:   3'- uCGCGAGUGaCGG-----CUUGugUgCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 20504 0.78 0.357939
Target:  5'- uGCGgUCGCUgcGCCGAgaagccagggGCACGCGUUGCg -3'
miRNA:   3'- uCGCgAGUGA--CGGCU----------UGUGUGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.