Results 1 - 20 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24466 | 5' | -55.2 | NC_005264.1 | + | 65426 | 1.12 | 0.002258 |
Target: 5'- cAGCGCUCACUGCCGAACACACGUCGCa -3' miRNA: 3'- -UCGCGAGUGACGGCUUGUGUGCAGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 4329 | 0.8 | 0.283764 |
Target: 5'- cAGCGCagGCcugccccuggcgGCUGAGCGCGCGUCGCa -3' miRNA: 3'- -UCGCGagUGa-----------CGGCUUGUGUGCAGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 123356 | 0.8 | 0.283764 |
Target: 5'- cAGCGCagGCcugccccuggcgGCUGAGCGCGCGUCGCa -3' miRNA: 3'- -UCGCGagUGa-----------CGGCUUGUGUGCAGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 20504 | 0.78 | 0.357939 |
Target: 5'- uGCGgUCGCUgcGCCGAgaagccagggGCACGCGUUGCg -3' miRNA: 3'- uCGCgAGUGA--CGGCU----------UGUGUGCAGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 47882 | 0.78 | 0.373988 |
Target: 5'- cGCGCUagGCUGCgGGAuauCAUACGUCGCg -3' miRNA: 3'- uCGCGAg-UGACGgCUU---GUGUGCAGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 3463 | 0.77 | 0.398959 |
Target: 5'- uGGCGCcCGgUGCCGcauccacgauguGGCACGCGUCGUg -3' miRNA: 3'- -UCGCGaGUgACGGC------------UUGUGUGCAGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 139560 | 0.77 | 0.407517 |
Target: 5'- uGCGCUCGCUGC---ACGCGCG-CGCg -3' miRNA: 3'- uCGCGAGUGACGgcuUGUGUGCaGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 81378 | 0.76 | 0.442866 |
Target: 5'- gAGCGCacaguUUACUGCCGAgauGCAUGCGggugCGCg -3' miRNA: 3'- -UCGCG-----AGUGACGGCU---UGUGUGCa---GCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 66833 | 0.75 | 0.479881 |
Target: 5'- uGCGUUC-UUGUCGGACGC-CGUCGCc -3' miRNA: 3'- uCGCGAGuGACGGCUUGUGuGCAGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 33696 | 0.74 | 0.538032 |
Target: 5'- cGCGCaUCGCU-CCGAGC-CGCGUCuGCg -3' miRNA: 3'- uCGCG-AGUGAcGGCUUGuGUGCAG-CG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 104200 | 0.73 | 0.588247 |
Target: 5'- uGGuCGacCUCGCcGCaGAGCACGCGUCGCa -3' miRNA: 3'- -UC-GC--GAGUGaCGgCUUGUGUGCAGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 9548 | 0.73 | 0.636177 |
Target: 5'- uGuCGCUCGCaGCCGGugGCggcuagcagguaaaACGUCGCc -3' miRNA: 3'- uC-GCGAGUGaCGGCUugUG--------------UGCAGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 66609 | 0.73 | 0.639243 |
Target: 5'- uGCGC-CGCguUGCCG-GCGC-CGUCGCg -3' miRNA: 3'- uCGCGaGUG--ACGGCuUGUGuGCAGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 36747 | 0.72 | 0.649456 |
Target: 5'- cAGCGCgacggCGCcgGCCG-GCGC-CGUCGCc -3' miRNA: 3'- -UCGCGa----GUGa-CGGCuUGUGuGCAGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 155773 | 0.72 | 0.649456 |
Target: 5'- cAGCGCgacggCGCcgGCCG-GCGC-CGUCGCc -3' miRNA: 3'- -UCGCGa----GUGa-CGGCuUGUGuGCAGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 8822 | 0.72 | 0.659656 |
Target: 5'- cGcCGCUCGCgGCacgGAACACgacaaACGUCGCg -3' miRNA: 3'- uC-GCGAGUGaCGg--CUUGUG-----UGCAGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 127848 | 0.72 | 0.659656 |
Target: 5'- cGcCGCUCGCgGCacgGAACACgacaaACGUCGCg -3' miRNA: 3'- uC-GCGAGUGaCGg--CUUGUG-----UGCAGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 144985 | 0.72 | 0.669833 |
Target: 5'- -uUGCUCACgcgGUCGAACAgCGCG-CGCg -3' miRNA: 3'- ucGCGAGUGa--CGGCUUGU-GUGCaGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 93479 | 0.72 | 0.679981 |
Target: 5'- cGCGCUgucugaggCGCUGCUGGcgGCcgGCGCGUCGUu -3' miRNA: 3'- uCGCGA--------GUGACGGCU--UG--UGUGCAGCG- -5' |
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24466 | 5' | -55.2 | NC_005264.1 | + | 23399 | 0.72 | 0.679981 |
Target: 5'- cGCcCUCuugugACgGCCGAGCACGCGUaCGCc -3' miRNA: 3'- uCGcGAG-----UGaCGGCUUGUGUGCA-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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