miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24466 5' -55.2 NC_005264.1 + 130857 0.66 0.937438
Target:  5'- uGGCGCUguagCGCgcaUCGGACACGCGgcccgUCGCc -3'
miRNA:   3'- -UCGCGA----GUGac-GGCUUGUGUGC-----AGCG- -5'
24466 5' -55.2 NC_005264.1 + 157202 0.66 0.932502
Target:  5'- -cCGCcgCGCUGUgGgGACACcuaGCGUCGCg -3'
miRNA:   3'- ucGCGa-GUGACGgC-UUGUG---UGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 110379 0.66 0.932502
Target:  5'- uAGCGUUUuCUGCUacGCGCACGgCGUc -3'
miRNA:   3'- -UCGCGAGuGACGGcuUGUGUGCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 26360 0.66 0.9466
Target:  5'- uGGCGUUC-CgGCCGuAugACGagaggaGUCGCg -3'
miRNA:   3'- -UCGCGAGuGaCGGC-UugUGUg-----CAGCG- -5'
24466 5' -55.2 NC_005264.1 + 84135 0.66 0.927857
Target:  5'- cGGCaGCUCGCgagccccgggaagugGUCGcAGCGCGCG-CGCc -3'
miRNA:   3'- -UCG-CGAGUGa--------------CGGC-UUGUGUGCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 88978 0.66 0.937438
Target:  5'- cGGUgaGCUCAgUGaCCGGgaACACAgaauuccaguuCGUCGCg -3'
miRNA:   3'- -UCG--CGAGUgAC-GGCU--UGUGU-----------GCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 153339 0.66 0.9466
Target:  5'- gGGCGC-CGC-GCCuGACGCugGcugacUCGCu -3'
miRNA:   3'- -UCGCGaGUGaCGGcUUGUGugC-----AGCG- -5'
24466 5' -55.2 NC_005264.1 + 11357 0.66 0.937438
Target:  5'- uGCGCUaucCUGUCGuucuugcggaagAACGCggccGCGUCGCg -3'
miRNA:   3'- uCGCGAgu-GACGGC------------UUGUG----UGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 112760 0.66 0.942136
Target:  5'- --aGCUCcCUGCCGAcgGCACGg-GCa -3'
miRNA:   3'- ucgCGAGuGACGGCUugUGUGCagCG- -5'
24466 5' -55.2 NC_005264.1 + 797 0.66 0.937438
Target:  5'- uAGCGCUCcaguACgGCUGggUGCGCGgccgGCu -3'
miRNA:   3'- -UCGCGAG----UGaCGGCuuGUGUGCag--CG- -5'
24466 5' -55.2 NC_005264.1 + 154038 0.66 0.932502
Target:  5'- cGGCGCUCGaaGagGAGCGCugGcCGUc -3'
miRNA:   3'- -UCGCGAGUgaCggCUUGUGugCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 121875 0.66 0.927329
Target:  5'- cGCGCUCGC-GCCGu-CGCcCGcUGCg -3'
miRNA:   3'- uCGCGAGUGaCGGCuuGUGuGCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 109964 0.66 0.942136
Target:  5'- cAGCcccCUCGCUcGCgCGugUGCACGUCGUa -3'
miRNA:   3'- -UCGc--GAGUGA-CG-GCuuGUGUGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 156297 0.66 0.9466
Target:  5'- aGGCGCUC-CUGCCGAA-GCccccUGcCGCc -3'
miRNA:   3'- -UCGCGAGuGACGGCUUgUGu---GCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 121640 0.66 0.927329
Target:  5'- aGGCGCga---GCCGAGCAgGCGggGCg -3'
miRNA:   3'- -UCGCGagugaCGGCUUGUgUGCagCG- -5'
24466 5' -55.2 NC_005264.1 + 108524 0.66 0.942136
Target:  5'- uGCGC-CACcaCCGuGGCACacuGCGUCGCa -3'
miRNA:   3'- uCGCGaGUGacGGC-UUGUG---UGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 115204 0.66 0.932502
Target:  5'- cGUGCUCcucUUGCCcgccaGAACAUAUGUaCGCg -3'
miRNA:   3'- uCGCGAGu--GACGG-----CUUGUGUGCA-GCG- -5'
24466 5' -55.2 NC_005264.1 + 75104 0.66 0.9466
Target:  5'- aGGCGCcgGC-GCCGAGCugGgG-CGCa -3'
miRNA:   3'- -UCGCGagUGaCGGCUUGugUgCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 106253 0.66 0.927329
Target:  5'- aGGCGCUCGC-GCCu-GCugACGgCGg -3'
miRNA:   3'- -UCGCGAGUGaCGGcuUGugUGCaGCg -5'
24466 5' -55.2 NC_005264.1 + 40679 0.66 0.942136
Target:  5'- uGGCGCcguUCGgcGUCGAGCACGCGUauaGUu -3'
miRNA:   3'- -UCGCG---AGUgaCGGCUUGUGUGCAg--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.