miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24466 5' -55.2 NC_005264.1 + 55571 0.69 0.805038
Target:  5'- gAGCGCggccCACUGCagCGGACAUGCGccCGUg -3'
miRNA:   3'- -UCGCGa---GUGACG--GCUUGUGUGCa-GCG- -5'
24466 5' -55.2 NC_005264.1 + 23399 0.72 0.679981
Target:  5'- cGCcCUCuugugACgGCCGAGCACGCGUaCGCc -3'
miRNA:   3'- uCGcGAG-----UGaCGGCUUGUGUGCA-GCG- -5'
24466 5' -55.2 NC_005264.1 + 93479 0.72 0.679981
Target:  5'- cGCGCUgucugaggCGCUGCUGGcgGCcgGCGCGUCGUu -3'
miRNA:   3'- uCGCGA--------GUGACGGCU--UG--UGUGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 31881 0.71 0.720088
Target:  5'- cGGCGCaCGCcuUGUCGAuGCugACGUUGCg -3'
miRNA:   3'- -UCGCGaGUG--ACGGCU-UGugUGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 20292 0.71 0.739727
Target:  5'- cGCGCUUGCgGCCccgagGGGCugAgGUCGCu -3'
miRNA:   3'- uCGCGAGUGaCGG-----CUUGugUgCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 46468 0.71 0.739727
Target:  5'- cGGCGCUCuuugcCUGUgGAGuCGCGgGUUGCg -3'
miRNA:   3'- -UCGCGAGu----GACGgCUU-GUGUgCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 117684 0.71 0.749411
Target:  5'- cGCGCUCucCUGCCu--C-CGCGUCGUg -3'
miRNA:   3'- uCGCGAGu-GACGGcuuGuGUGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 47109 0.7 0.756129
Target:  5'- uAGCGCUCGCcgcgcccccuaccaUGCCGGAUGacUugGUgGCg -3'
miRNA:   3'- -UCGCGAGUG--------------ACGGCUUGU--GugCAgCG- -5'
24466 5' -55.2 NC_005264.1 + 136359 0.7 0.777809
Target:  5'- gGGCGCUgggCGCUGCCG-GCGCGaauagCGCu -3'
miRNA:   3'- -UCGCGA---GUGACGGCuUGUGUgca--GCG- -5'
24466 5' -55.2 NC_005264.1 + 144985 0.72 0.669833
Target:  5'- -uUGCUCACgcgGUCGAACAgCGCG-CGCg -3'
miRNA:   3'- ucGCGAGUGa--CGGCUUGU-GUGCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 127848 0.72 0.659656
Target:  5'- cGcCGCUCGCgGCacgGAACACgacaaACGUCGCg -3'
miRNA:   3'- uC-GCGAGUGaCGg--CUUGUG-----UGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 155773 0.72 0.649456
Target:  5'- cAGCGCgacggCGCcgGCCG-GCGC-CGUCGCc -3'
miRNA:   3'- -UCGCGa----GUGa-CGGCuUGUGuGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 20504 0.78 0.357939
Target:  5'- uGCGgUCGCUgcGCCGAgaagccagggGCACGCGUUGCg -3'
miRNA:   3'- uCGCgAGUGA--CGGCU----------UGUGUGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 3463 0.77 0.398959
Target:  5'- uGGCGCcCGgUGCCGcauccacgauguGGCACGCGUCGUg -3'
miRNA:   3'- -UCGCGaGUgACGGC------------UUGUGUGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 139560 0.77 0.407517
Target:  5'- uGCGCUCGCUGC---ACGCGCG-CGCg -3'
miRNA:   3'- uCGCGAGUGACGgcuUGUGUGCaGCG- -5'
24466 5' -55.2 NC_005264.1 + 66833 0.75 0.479881
Target:  5'- uGCGUUC-UUGUCGGACGC-CGUCGCc -3'
miRNA:   3'- uCGCGAGuGACGGCUUGUGuGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 33696 0.74 0.538032
Target:  5'- cGCGCaUCGCU-CCGAGC-CGCGUCuGCg -3'
miRNA:   3'- uCGCG-AGUGAcGGCUUGuGUGCAG-CG- -5'
24466 5' -55.2 NC_005264.1 + 104200 0.73 0.588247
Target:  5'- uGGuCGacCUCGCcGCaGAGCACGCGUCGCa -3'
miRNA:   3'- -UC-GC--GAGUGaCGgCUUGUGUGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 9548 0.73 0.636177
Target:  5'- uGuCGCUCGCaGCCGGugGCggcuagcagguaaaACGUCGCc -3'
miRNA:   3'- uC-GCGAGUGaCGGCUugUG--------------UGCAGCG- -5'
24466 5' -55.2 NC_005264.1 + 66609 0.73 0.639243
Target:  5'- uGCGC-CGCguUGCCG-GCGC-CGUCGCg -3'
miRNA:   3'- uCGCGaGUG--ACGGCuUGUGuGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.