miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24469 3' -51.8 NC_005264.1 + 59479 1.08 0.009705
Target:  5'- gUCACCACCGUCGUGUACACGACUACUu -3'
miRNA:   3'- -AGUGGUGGCAGCACAUGUGCUGAUGA- -5'
24469 3' -51.8 NC_005264.1 + 103350 0.75 0.6959
Target:  5'- cCGCUACaaaguaGUCGUGUACACGACg--- -3'
miRNA:   3'- aGUGGUGg-----CAGCACAUGUGCUGauga -5'
24469 3' -51.8 NC_005264.1 + 72465 0.72 0.846032
Target:  5'- gCGCCGCCGgucggaUCGUGUAC-CGGCaGCg -3'
miRNA:   3'- aGUGGUGGC------AGCACAUGuGCUGaUGa -5'
24469 3' -51.8 NC_005264.1 + 150833 0.72 0.876923
Target:  5'- gUCGCCGCCGcaggUCGUG-ACGCGuacuCUGCc -3'
miRNA:   3'- -AGUGGUGGC----AGCACaUGUGCu---GAUGa -5'
24469 3' -51.8 NC_005264.1 + 31807 0.72 0.876923
Target:  5'- gUCGCCGCCGcaggUCGUG-ACGCGuacuCUGCc -3'
miRNA:   3'- -AGUGGUGGC----AGCACaUGUGCu---GAUGa -5'
24469 3' -51.8 NC_005264.1 + 90766 0.71 0.89104
Target:  5'- -uGCCGCCGUgGcUGUGCAUGACa--- -3'
miRNA:   3'- agUGGUGGCAgC-ACAUGUGCUGauga -5'
24469 3' -51.8 NC_005264.1 + 75399 0.71 0.897748
Target:  5'- gCGCCACCGUC---UGCGCGGCcGCg -3'
miRNA:   3'- aGUGGUGGCAGcacAUGUGCUGaUGa -5'
24469 3' -51.8 NC_005264.1 + 51993 0.71 0.910446
Target:  5'- uUCGCCgagaggACCGUCG-GUGCucuaGACUACg -3'
miRNA:   3'- -AGUGG------UGGCAGCaCAUGug--CUGAUGa -5'
24469 3' -51.8 NC_005264.1 + 18172 0.71 0.910446
Target:  5'- gCGCCACUGUCGUGgGgGCGAaaACa -3'
miRNA:   3'- aGUGGUGGCAGCACaUgUGCUgaUGa -5'
24469 3' -51.8 NC_005264.1 + 39116 0.7 0.927663
Target:  5'- -aGCUGCUGUCGUGgACGCGGCgccACUc -3'
miRNA:   3'- agUGGUGGCAGCACaUGUGCUGa--UGA- -5'
24469 3' -51.8 NC_005264.1 + 158143 0.7 0.927663
Target:  5'- -aGCUGCUGUCGUGgACGCGGCgccACUc -3'
miRNA:   3'- agUGGUGGCAGCACaUGUGCUGa--UGA- -5'
24469 3' -51.8 NC_005264.1 + 44508 0.69 0.942664
Target:  5'- cCugC-CCGUCGUGUACuCGuaccGCUACg -3'
miRNA:   3'- aGugGuGGCAGCACAUGuGC----UGAUGa -5'
24469 3' -51.8 NC_005264.1 + 135572 0.69 0.947175
Target:  5'- -aGCCGCgCGUCGcu--CGCGACUACg -3'
miRNA:   3'- agUGGUG-GCAGCacauGUGCUGAUGa -5'
24469 3' -51.8 NC_005264.1 + 13431 0.69 0.951445
Target:  5'- cCGCCGCCGcCGag-ACGCGACgcgGCg -3'
miRNA:   3'- aGUGGUGGCaGCacaUGUGCUGa--UGa -5'
24469 3' -51.8 NC_005264.1 + 132458 0.69 0.951445
Target:  5'- cCGCCGCCGcCGag-ACGCGACgcgGCg -3'
miRNA:   3'- aGUGGUGGCaGCacaUGUGCUGa--UGa -5'
24469 3' -51.8 NC_005264.1 + 94736 0.69 0.955478
Target:  5'- gCGCC-UUGUCGcUGUACGCGACagaUACUa -3'
miRNA:   3'- aGUGGuGGCAGC-ACAUGUGCUG---AUGA- -5'
24469 3' -51.8 NC_005264.1 + 117082 0.68 0.962848
Target:  5'- cCAUCGCUGUCuGUGUgcuagauacgGCACGACcGCg -3'
miRNA:   3'- aGUGGUGGCAG-CACA----------UGUGCUGaUGa -5'
24469 3' -51.8 NC_005264.1 + 46906 0.68 0.962848
Target:  5'- gCugCGCCG-CGUGUuCGCGGCU-CUc -3'
miRNA:   3'- aGugGUGGCaGCACAuGUGCUGAuGA- -5'
24469 3' -51.8 NC_005264.1 + 79142 0.68 0.969019
Target:  5'- cCGCCACCGcauuUCGUGUacuacacGCGCGGCc--- -3'
miRNA:   3'- aGUGGUGGC----AGCACA-------UGUGCUGauga -5'
24469 3' -51.8 NC_005264.1 + 148220 0.68 0.974949
Target:  5'- uUCGCaucgauGCCGUCGUGU-CuCGAUUACg -3'
miRNA:   3'- -AGUGg-----UGGCAGCACAuGuGCUGAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.