miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24469 3' -51.8 NC_005264.1 + 6269 0.67 0.977461
Target:  5'- gUCGCCGCCGUCGggagGCAaacaGAUcuUGCa -3'
miRNA:   3'- -AGUGGUGGCAGCaca-UGUg---CUG--AUGa -5'
24469 3' -51.8 NC_005264.1 + 13431 0.69 0.951445
Target:  5'- cCGCCGCCGcCGag-ACGCGACgcgGCg -3'
miRNA:   3'- aGUGGUGGCaGCacaUGUGCUGa--UGa -5'
24469 3' -51.8 NC_005264.1 + 18172 0.71 0.910446
Target:  5'- gCGCCACUGUCGUGgGgGCGAaaACa -3'
miRNA:   3'- aGUGGUGGCAGCACaUgUGCUgaUGa -5'
24469 3' -51.8 NC_005264.1 + 21511 0.66 0.991272
Target:  5'- gCACCGCCGUCGcagugggcgcaggUGUAguUGAC-GCUu -3'
miRNA:   3'- aGUGGUGGCAGC-------------ACAUguGCUGaUGA- -5'
24469 3' -51.8 NC_005264.1 + 25961 0.66 0.987325
Target:  5'- aCGgCGCgGaCGUGUGCACGAUUGg- -3'
miRNA:   3'- aGUgGUGgCaGCACAUGUGCUGAUga -5'
24469 3' -51.8 NC_005264.1 + 29914 0.67 0.977461
Target:  5'- cUACC-CCGUCGgcgcuagggagGUACGCG-CUGCg -3'
miRNA:   3'- aGUGGuGGCAGCa----------CAUGUGCuGAUGa -5'
24469 3' -51.8 NC_005264.1 + 30263 0.67 0.977461
Target:  5'- gCugCACCGaaGUGUaGCGCGGCcGCg -3'
miRNA:   3'- aGugGUGGCagCACA-UGUGCUGaUGa -5'
24469 3' -51.8 NC_005264.1 + 31807 0.72 0.876923
Target:  5'- gUCGCCGCCGcaggUCGUG-ACGCGuacuCUGCc -3'
miRNA:   3'- -AGUGGUGGC----AGCACaUGUGCu---GAUGa -5'
24469 3' -51.8 NC_005264.1 + 33467 0.66 0.988385
Target:  5'- cCGCCAcggucuuuuccCCGcgcacUCGUGUauuggcuauucguuGCGCGGCUACUa -3'
miRNA:   3'- aGUGGU-----------GGC-----AGCACA--------------UGUGCUGAUGA- -5'
24469 3' -51.8 NC_005264.1 + 34760 0.67 0.985685
Target:  5'- gUCGCCGCUGUCGc-UACACGAa---- -3'
miRNA:   3'- -AGUGGUGGCAGCacAUGUGCUgauga -5'
24469 3' -51.8 NC_005264.1 + 36076 0.67 0.981922
Target:  5'- -uGCUGCCGUCGcUGUcccucucuucgGCGCGGCUGg- -3'
miRNA:   3'- agUGGUGGCAGC-ACA-----------UGUGCUGAUga -5'
24469 3' -51.8 NC_005264.1 + 37292 0.67 0.985685
Target:  5'- -uGCCGCCGauuaCGUGUACuACGGCa--- -3'
miRNA:   3'- agUGGUGGCa---GCACAUG-UGCUGauga -5'
24469 3' -51.8 NC_005264.1 + 37748 0.66 0.990168
Target:  5'- cCGCCACCGUCG---ACGCGAgUucguCUa -3'
miRNA:   3'- aGUGGUGGCAGCacaUGUGCUgAu---GA- -5'
24469 3' -51.8 NC_005264.1 + 39116 0.7 0.927663
Target:  5'- -aGCUGCUGUCGUGgACGCGGCgccACUc -3'
miRNA:   3'- agUGGUGGCAGCACaUGUGCUGa--UGA- -5'
24469 3' -51.8 NC_005264.1 + 40366 0.67 0.979559
Target:  5'- aCAUCGuuGUCGUaggccucGUACACGACUu-- -3'
miRNA:   3'- aGUGGUggCAGCA-------CAUGUGCUGAuga -5'
24469 3' -51.8 NC_005264.1 + 44508 0.69 0.942664
Target:  5'- cCugC-CCGUCGUGUACuCGuaccGCUACg -3'
miRNA:   3'- aGugGuGGCAGCACAUGuGC----UGAUGa -5'
24469 3' -51.8 NC_005264.1 + 46906 0.68 0.962848
Target:  5'- gCugCGCCG-CGUGUuCGCGGCU-CUc -3'
miRNA:   3'- aGugGUGGCaGCACAuGUGCUGAuGA- -5'
24469 3' -51.8 NC_005264.1 + 51993 0.71 0.910446
Target:  5'- uUCGCCgagaggACCGUCG-GUGCucuaGACUACg -3'
miRNA:   3'- -AGUGG------UGGCAGCaCAUGug--CUGAUGa -5'
24469 3' -51.8 NC_005264.1 + 54137 0.67 0.981922
Target:  5'- gCGCCGggGUCG-GUGC-CGACUACa -3'
miRNA:   3'- aGUGGUggCAGCaCAUGuGCUGAUGa -5'
24469 3' -51.8 NC_005264.1 + 54548 0.66 0.992486
Target:  5'- uUCGCCGCCGacUCG-GUcaGCGCGAUU-CUc -3'
miRNA:   3'- -AGUGGUGGC--AGCaCA--UGUGCUGAuGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.