Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24469 | 3' | -51.8 | NC_005264.1 | + | 158143 | 0.7 | 0.927663 |
Target: 5'- -aGCUGCUGUCGUGgACGCGGCgccACUc -3' miRNA: 3'- agUGGUGGCAGCACaUGUGCUGa--UGA- -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 156319 | 0.67 | 0.985685 |
Target: 5'- -uGCCGCCGauuaCGUGUACuACGGCa--- -3' miRNA: 3'- agUGGUGGCa---GCACAUG-UGCUGauga -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 150833 | 0.72 | 0.876923 |
Target: 5'- gUCGCCGCCGcaggUCGUG-ACGCGuacuCUGCc -3' miRNA: 3'- -AGUGGUGGC----AGCACaUGUGCu---GAUGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 149533 | 0.67 | 0.983886 |
Target: 5'- gCGUCGCCGUCGUaaccaggaggGUACAUGACU-CUc -3' miRNA: 3'- aGUGGUGGCAGCA----------CAUGUGCUGAuGA- -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 148220 | 0.68 | 0.974949 |
Target: 5'- uUCGCaucgauGCCGUCGUGU-CuCGAUUACg -3' miRNA: 3'- -AGUGg-----UGGCAGCACAuGuGCUGAUGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 144841 | 0.66 | 0.993469 |
Target: 5'- cCGCCGCCGUCagagccgGUGC-CGGCUuugaACg -3' miRNA: 3'- aGUGGUGGCAGca-----CAUGuGCUGA----UGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 137224 | 0.66 | 0.987325 |
Target: 5'- cCACCGCCGcCGUGUuccgcaACGcCGGCccgGCg -3' miRNA: 3'- aGUGGUGGCaGCACA------UGU-GCUGa--UGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 135572 | 0.69 | 0.947175 |
Target: 5'- -aGCCGCgCGUCGcu--CGCGACUACg -3' miRNA: 3'- agUGGUG-GCAGCacauGUGCUGAUGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 132458 | 0.69 | 0.951445 |
Target: 5'- cCGCCGCCGcCGag-ACGCGACgcgGCg -3' miRNA: 3'- aGUGGUGGCaGCacaUGUGCUGa--UGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 126888 | 0.66 | 0.987168 |
Target: 5'- aUCGCCAUCGUCG---GCGCGaaacaggucucgcGCUACa -3' miRNA: 3'- -AGUGGUGGCAGCacaUGUGC-------------UGAUGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 125296 | 0.67 | 0.977461 |
Target: 5'- gUCGCCGCCGUCGggagGCAaacaGAUcuUGCa -3' miRNA: 3'- -AGUGGUGGCAGCaca-UGUg---CUG--AUGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 117082 | 0.68 | 0.962848 |
Target: 5'- cCAUCGCUGUCuGUGUgcuagauacgGCACGACcGCg -3' miRNA: 3'- aGUGGUGGCAG-CACA----------UGUGCUGaUGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 112588 | 0.66 | 0.993469 |
Target: 5'- aUCGCCGCCG-CGgcagGUGCACaaACUGg- -3' miRNA: 3'- -AGUGGUGGCaGCa---CAUGUGc-UGAUga -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 111580 | 0.68 | 0.974949 |
Target: 5'- -aACCGCCGUgGUGUucuCGuggUGGCUGCa -3' miRNA: 3'- agUGGUGGCAgCACAu--GU---GCUGAUGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 103350 | 0.75 | 0.6959 |
Target: 5'- cCGCUACaaaguaGUCGUGUACACGACg--- -3' miRNA: 3'- aGUGGUGg-----CAGCACAUGUGCUGauga -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 102871 | 0.68 | 0.974949 |
Target: 5'- cCACCGCCG-CGUGgcugaGCGGCgcggACa -3' miRNA: 3'- aGUGGUGGCaGCACaug--UGCUGa---UGa -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 94736 | 0.69 | 0.955478 |
Target: 5'- gCGCC-UUGUCGcUGUACGCGACagaUACUa -3' miRNA: 3'- aGUGGuGGCAGC-ACAUGUGCUG---AUGA- -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 90766 | 0.71 | 0.89104 |
Target: 5'- -uGCCGCCGUgGcUGUGCAUGACa--- -3' miRNA: 3'- agUGGUGGCAgC-ACAUGUGCUGauga -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 88473 | 0.67 | 0.979783 |
Target: 5'- aCACgaCGCCGUUGUGUGgauugucucguCGCGACUGa- -3' miRNA: 3'- aGUG--GUGGCAGCACAU-----------GUGCUGAUga -5' |
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24469 | 3' | -51.8 | NC_005264.1 | + | 87734 | 0.66 | 0.992486 |
Target: 5'- uUCAUCGCCG-Ca---GCGCGACUGCg -3' miRNA: 3'- -AGUGGUGGCaGcacaUGUGCUGAUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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