miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24470 3' -57.6 NC_005264.1 + 59346 1.1 0.001716
Target:  5'- cAGCCUGUCGCGGAUCAGACUGCGCACg -3'
miRNA:   3'- -UCGGACAGCGCCUAGUCUGACGCGUG- -5'
24470 3' -57.6 NC_005264.1 + 91577 0.79 0.217701
Target:  5'- aGGCUUGUCGCGGAgcucauaauuguuaUAGGCUGCuGCACg -3'
miRNA:   3'- -UCGGACAGCGCCUa-------------GUCUGACG-CGUG- -5'
24470 3' -57.6 NC_005264.1 + 63089 0.72 0.49121
Target:  5'- gGGCC-GUCGCGGAa-AGGCcuaccucgUGCGCACg -3'
miRNA:   3'- -UCGGaCAGCGCCUagUCUG--------ACGCGUG- -5'
24470 3' -57.6 NC_005264.1 + 20268 0.71 0.549641
Target:  5'- cGGCC--UCGCGGAggGGACcgucUGCGCGCu -3'
miRNA:   3'- -UCGGacAGCGCCUagUCUG----ACGCGUG- -5'
24470 3' -57.6 NC_005264.1 + 76345 0.71 0.549641
Target:  5'- uGGCCg--CGCGGc---GACUGCGCGCa -3'
miRNA:   3'- -UCGGacaGCGCCuaguCUGACGCGUG- -5'
24470 3' -57.6 NC_005264.1 + 94405 0.7 0.610046
Target:  5'- cGCagacCGCGGcgCGGACUGCGCGa -3'
miRNA:   3'- uCGgacaGCGCCuaGUCUGACGCGUg -5'
24470 3' -57.6 NC_005264.1 + 119478 0.7 0.630385
Target:  5'- cGGCauauaCUGcUUGUGGAUguGGCUGCGCAg -3'
miRNA:   3'- -UCG-----GAC-AGCGCCUAguCUGACGCGUg -5'
24470 3' -57.6 NC_005264.1 + 146430 0.7 0.64056
Target:  5'- uGGCUcgaUGcCGCGGcUCuGACuUGCGCACa -3'
miRNA:   3'- -UCGG---ACaGCGCCuAGuCUG-ACGCGUG- -5'
24470 3' -57.6 NC_005264.1 + 3689 0.69 0.691175
Target:  5'- gGGCCUGgCGCGGAa-AGg--GCGCACa -3'
miRNA:   3'- -UCGGACaGCGCCUagUCugaCGCGUG- -5'
24470 3' -57.6 NC_005264.1 + 9908 0.68 0.711141
Target:  5'- gGGCCU-UCGgGGAcUCGcGACUGCGgGCu -3'
miRNA:   3'- -UCGGAcAGCgCCU-AGU-CUGACGCgUG- -5'
24470 3' -57.6 NC_005264.1 + 93824 0.68 0.740568
Target:  5'- uGGCCgagGUgGCGGuUCGGuugGCcgUGCGCGCa -3'
miRNA:   3'- -UCGGa--CAgCGCCuAGUC---UG--ACGCGUG- -5'
24470 3' -57.6 NC_005264.1 + 75072 0.68 0.740568
Target:  5'- uAGCUga-CGCGGAgaggCAGGgUGUGCGCu -3'
miRNA:   3'- -UCGGacaGCGCCUa---GUCUgACGCGUG- -5'
24470 3' -57.6 NC_005264.1 + 113365 0.67 0.775677
Target:  5'- uGCCcGUcgaauacggCGCGGGUCAGgguuaugcaggcgaGCUGCGCGa -3'
miRNA:   3'- uCGGaCA---------GCGCCUAGUC--------------UGACGCGUg -5'
24470 3' -57.6 NC_005264.1 + 83160 0.67 0.800227
Target:  5'- uGUCUGUCGCGGGgauggggagaauuugUCAGcgGCagGCGCGg -3'
miRNA:   3'- uCGGACAGCGCCU---------------AGUC--UGa-CGCGUg -5'
24470 3' -57.6 NC_005264.1 + 40749 0.67 0.80554
Target:  5'- cGCCaGUCGCGGcg-AGACaGCGUGCc -3'
miRNA:   3'- uCGGaCAGCGCCuagUCUGaCGCGUG- -5'
24470 3' -57.6 NC_005264.1 + 159775 0.67 0.80554
Target:  5'- cGCCaGUCGCGGcg-AGACaGCGUGCc -3'
miRNA:   3'- uCGGaCAGCGCCuagUCUGaCGCGUG- -5'
24470 3' -57.6 NC_005264.1 + 64121 0.67 0.814269
Target:  5'- cAGUCucgUGUCGCcGAUCAGGCUcGC-CACg -3'
miRNA:   3'- -UCGG---ACAGCGcCUAGUCUGA-CGcGUG- -5'
24470 3' -57.6 NC_005264.1 + 46259 0.67 0.814269
Target:  5'- cGCCUGggggCGUuuagGGGUCGccgaGCUGCGCAUc -3'
miRNA:   3'- uCGGACa---GCG----CCUAGUc---UGACGCGUG- -5'
24470 3' -57.6 NC_005264.1 + 25095 0.66 0.822835
Target:  5'- cGCCgGggacaaGCGGggCAGACUuaGCGCg -3'
miRNA:   3'- uCGGaCag----CGCCuaGUCUGAcgCGUG- -5'
24470 3' -57.6 NC_005264.1 + 50549 0.66 0.822835
Target:  5'- aGGCCUGUCGaagc-UAGGC-GCGCGCg -3'
miRNA:   3'- -UCGGACAGCgccuaGUCUGaCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.