miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24470 5' -55.4 NC_005264.1 + 120215 0.66 0.939878
Target:  5'- gGGUACGCAGCgGacCGggcGUCCgcGGCCa -3'
miRNA:   3'- aCCAUGUGUCGgUa-GUa--CAGG--CCGGg -5'
24470 5' -55.4 NC_005264.1 + 1188 0.66 0.939878
Target:  5'- gGGUACGCAGCgGacCGggcGUCCgcGGCCa -3'
miRNA:   3'- aCCAUGUGUCGgUa-GUa--CAGG--CCGGg -5'
24470 5' -55.4 NC_005264.1 + 5139 0.66 0.937977
Target:  5'- aGGUucucgauGCGCGGCCGcgccgCAUcGUCCgaagccuauucggaGGCCCu -3'
miRNA:   3'- aCCA-------UGUGUCGGUa----GUA-CAGG--------------CCGGG- -5'
24470 5' -55.4 NC_005264.1 + 78502 0.66 0.934558
Target:  5'- cGGUGCACgcggugaGGCCAguaacCAUcgcgCCGuGCCCg -3'
miRNA:   3'- aCCAUGUG-------UCGGUa----GUAca--GGC-CGGG- -5'
24470 5' -55.4 NC_005264.1 + 111648 0.66 0.924689
Target:  5'- aGGUAC-CAGUgAUCGUGUgCauagGGUCCc -3'
miRNA:   3'- aCCAUGuGUCGgUAGUACAgG----CCGGG- -5'
24470 5' -55.4 NC_005264.1 + 126134 0.66 0.924689
Target:  5'- cGGUuuccaACGC-GCCGUUAgcgCCGGCCg -3'
miRNA:   3'- aCCA-----UGUGuCGGUAGUacaGGCCGGg -5'
24470 5' -55.4 NC_005264.1 + 7107 0.66 0.924689
Target:  5'- cGGUuuccaACGC-GCCGUUAgcgCCGGCCg -3'
miRNA:   3'- aCCA-----UGUGuCGGUAGUacaGGCCGGg -5'
24470 5' -55.4 NC_005264.1 + 112571 0.66 0.919147
Target:  5'- uUGGUGaucucCGCGGCCAUgGcGUCCccagaGGCCa -3'
miRNA:   3'- -ACCAU-----GUGUCGGUAgUaCAGG-----CCGGg -5'
24470 5' -55.4 NC_005264.1 + 120590 0.66 0.913366
Target:  5'- --aUGCuACAGCCAUCAcaUGUCCcuGCCg -3'
miRNA:   3'- accAUG-UGUCGGUAGU--ACAGGc-CGGg -5'
24470 5' -55.4 NC_005264.1 + 5980 0.67 0.907349
Target:  5'- aUGGgagACugGGCCAagGggaGUCguCGGCCCc -3'
miRNA:   3'- -ACCa--UGugUCGGUagUa--CAG--GCCGGG- -5'
24470 5' -55.4 NC_005264.1 + 154050 0.67 0.901095
Target:  5'- aGGaGCGCuGGCCGUCcUGgCCGacGCCCg -3'
miRNA:   3'- aCCaUGUG-UCGGUAGuACaGGC--CGGG- -5'
24470 5' -55.4 NC_005264.1 + 127243 0.67 0.901095
Target:  5'- cGGagACGCGGCCAUCGg--CCGaaGCCg -3'
miRNA:   3'- aCCa-UGUGUCGGUAGUacaGGC--CGGg -5'
24470 5' -55.4 NC_005264.1 + 139990 0.67 0.901095
Target:  5'- aGGUucGCGCGGCCucgCccGUCCGuaCCCg -3'
miRNA:   3'- aCCA--UGUGUCGGua-GuaCAGGCc-GGG- -5'
24470 5' -55.4 NC_005264.1 + 8216 0.67 0.901095
Target:  5'- cGGagACGCGGCCAUCGg--CCGaaGCCg -3'
miRNA:   3'- aCCa-UGUGUCGGUAGUacaGGC--CGGg -5'
24470 5' -55.4 NC_005264.1 + 35023 0.67 0.901095
Target:  5'- aGGaGCGCuGGCCGUCcUGgCCGacGCCCg -3'
miRNA:   3'- aCCaUGUG-UCGGUAGuACaGGC--CGGG- -5'
24470 5' -55.4 NC_005264.1 + 20510 0.67 0.901095
Target:  5'- cGGUGCAUucguAGaCGUCucuGUGUCCGGCg- -3'
miRNA:   3'- aCCAUGUG----UCgGUAG---UACAGGCCGgg -5'
24470 5' -55.4 NC_005264.1 + 24061 0.67 0.887893
Target:  5'- cGG-ACACAGCCAaCAgca-CGGCCa -3'
miRNA:   3'- aCCaUGUGUCGGUaGUacagGCCGGg -5'
24470 5' -55.4 NC_005264.1 + 815 0.67 0.887893
Target:  5'- gGGUGCGCGGCCGgcuuuagccUC-UGUCucuggCGuGCCCc -3'
miRNA:   3'- aCCAUGUGUCGGU---------AGuACAG-----GC-CGGG- -5'
24470 5' -55.4 NC_005264.1 + 41770 0.68 0.873788
Target:  5'- aGGU-CACGGCCuUCAUGaaagCCuGCCUc -3'
miRNA:   3'- aCCAuGUGUCGGuAGUACa---GGcCGGG- -5'
24470 5' -55.4 NC_005264.1 + 147707 0.68 0.873788
Target:  5'- cGGUGCagACAGaCCAUUccccagagaaagGUGggcCUGGCCCa -3'
miRNA:   3'- aCCAUG--UGUC-GGUAG------------UACa--GGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.