Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24470 | 5' | -55.4 | NC_005264.1 | + | 815 | 0.67 | 0.887893 |
Target: 5'- gGGUGCGCGGCCGgcuuuagccUC-UGUCucuggCGuGCCCc -3' miRNA: 3'- aCCAUGUGUCGGU---------AGuACAG-----GC-CGGG- -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 895 | 0.7 | 0.74417 |
Target: 5'- gGGUGUACGGCCc-CGUGUCgCGGgCCg -3' miRNA: 3'- aCCAUGUGUCGGuaGUACAG-GCCgGG- -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 1188 | 0.66 | 0.939878 |
Target: 5'- gGGUACGCAGCgGacCGggcGUCCgcGGCCa -3' miRNA: 3'- aCCAUGUGUCGgUa-GUa--CAGG--CCGGg -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 4265 | 0.68 | 0.866408 |
Target: 5'- ---cGCGCAGCgaGUC-UGUUCGGCCUg -3' miRNA: 3'- accaUGUGUCGg-UAGuACAGGCCGGG- -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 4981 | 0.69 | 0.817921 |
Target: 5'- cGGUGC-CcGCCAUCGUcgucguucucGUCCGcGCCg -3' miRNA: 3'- aCCAUGuGuCGGUAGUA----------CAGGC-CGGg -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 5139 | 0.66 | 0.937977 |
Target: 5'- aGGUucucgauGCGCGGCCGcgccgCAUcGUCCgaagccuauucggaGGCCCu -3' miRNA: 3'- aCCA-------UGUGUCGGUa----GUA-CAGG--------------CCGGG- -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 5980 | 0.67 | 0.907349 |
Target: 5'- aUGGgagACugGGCCAagGggaGUCguCGGCCCc -3' miRNA: 3'- -ACCa--UGugUCGGUagUa--CAG--GCCGGG- -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 6486 | 0.79 | 0.301132 |
Target: 5'- gGGUGCGCGGCCAUCGaGggCCGGUagCCg -3' miRNA: 3'- aCCAUGUGUCGGUAGUaCa-GGCCG--GG- -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 7107 | 0.66 | 0.924689 |
Target: 5'- cGGUuuccaACGC-GCCGUUAgcgCCGGCCg -3' miRNA: 3'- aCCA-----UGUGuCGGUAGUacaGGCCGGg -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 8216 | 0.67 | 0.901095 |
Target: 5'- cGGagACGCGGCCAUCGg--CCGaaGCCg -3' miRNA: 3'- aCCa-UGUGUCGGUAGUacaGGC--CGGg -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 20510 | 0.67 | 0.901095 |
Target: 5'- cGGUGCAUucguAGaCGUCucuGUGUCCGGCg- -3' miRNA: 3'- aCCAUGUG----UCgGUAG---UACAGGCCGgg -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 24061 | 0.67 | 0.887893 |
Target: 5'- cGG-ACACAGCCAaCAgca-CGGCCa -3' miRNA: 3'- aCCaUGUGUCGGUaGUacagGCCGGg -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 27870 | 0.68 | 0.83484 |
Target: 5'- --aUGCGCcGCCgccuuuuuGUCGUGUCUGGCCa -3' miRNA: 3'- accAUGUGuCGG--------UAGUACAGGCCGGg -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 35023 | 0.67 | 0.901095 |
Target: 5'- aGGaGCGCuGGCCGUCcUGgCCGacGCCCg -3' miRNA: 3'- aCCaUGUG-UCGGUAGuACaGGC--CGGG- -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 35784 | 0.72 | 0.649838 |
Target: 5'- cGGaggGCGCGguggcGCCGUCGUGgcgggcgccucugCCGGCCCc -3' miRNA: 3'- aCCa--UGUGU-----CGGUAGUACa------------GGCCGGG- -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 41770 | 0.68 | 0.873788 |
Target: 5'- aGGU-CACGGCCuUCAUGaaagCCuGCCUc -3' miRNA: 3'- aCCAuGUGUCGGuAGUACa---GGcCGGG- -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 47210 | 0.7 | 0.772814 |
Target: 5'- gGGgcCACGGCCGUCgAUGgCUGGUCg -3' miRNA: 3'- aCCauGUGUCGGUAG-UACaGGCCGGg -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 59385 | 1.12 | 0.002018 |
Target: 5'- cUGGUACACAGCCAUCAUGUCCGGCCCg -3' miRNA: 3'- -ACCAUGUGUCGGUAGUACAGGCCGGG- -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 65279 | 0.72 | 0.664141 |
Target: 5'- gUGGUcguAUGCAGCagcagCAUGUCUGGCUCu -3' miRNA: 3'- -ACCA---UGUGUCGgua--GUACAGGCCGGG- -5' |
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24470 | 5' | -55.4 | NC_005264.1 | + | 73058 | 0.73 | 0.592568 |
Target: 5'- cGGUAUGCGGCCAgagacguggCGUaGUCgGGCUCa -3' miRNA: 3'- aCCAUGUGUCGGUa--------GUA-CAGgCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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