miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24470 5' -55.4 NC_005264.1 + 160261 0.73 0.592568
Target:  5'- gGGUuauGCACGGCCAcccUCAUGUgacgcuugUCGGCCa -3'
miRNA:   3'- aCCA---UGUGUCGGU---AGUACA--------GGCCGGg -5'
24470 5' -55.4 NC_005264.1 + 154810 0.72 0.649838
Target:  5'- cGGaggGCGCGguggcGCCGUCGUGgcgggcgccucugCCGGCCCc -3'
miRNA:   3'- aCCa--UGUGU-----CGGUAGUACa------------GGCCGGG- -5'
24470 5' -55.4 NC_005264.1 + 154050 0.67 0.901095
Target:  5'- aGGaGCGCuGGCCGUCcUGgCCGacGCCCg -3'
miRNA:   3'- aCCaUGUG-UCGGUAGuACaGGC--CGGG- -5'
24470 5' -55.4 NC_005264.1 + 153880 0.73 0.592568
Target:  5'- uUGGUGCuGCAGCgAgu-UGgCCGGCCCg -3'
miRNA:   3'- -ACCAUG-UGUCGgUaguACaGGCCGGG- -5'
24470 5' -55.4 NC_005264.1 + 147707 0.68 0.873788
Target:  5'- cGGUGCagACAGaCCAUUccccagagaaagGUGggcCUGGCCCa -3'
miRNA:   3'- aCCAUG--UGUC-GGUAG------------UACa--GGCCGGG- -5'
24470 5' -55.4 NC_005264.1 + 146629 0.68 0.851021
Target:  5'- gGGUAgCGCGGCgCGUCccccguUGUCCGGUa- -3'
miRNA:   3'- aCCAU-GUGUCG-GUAGu-----ACAGGCCGgg -5'
24470 5' -55.4 NC_005264.1 + 141489 0.69 0.800326
Target:  5'- cGGc-UACAGCC-UCA--UCCGGCCCc -3'
miRNA:   3'- aCCauGUGUCGGuAGUacAGGCCGGG- -5'
24470 5' -55.4 NC_005264.1 + 141136 0.69 0.809204
Target:  5'- ---cGCACGGCCgggGUCAUGUUacgaGGUCCg -3'
miRNA:   3'- accaUGUGUCGG---UAGUACAGg---CCGGG- -5'
24470 5' -55.4 NC_005264.1 + 139990 0.67 0.901095
Target:  5'- aGGUucGCGCGGCCucgCccGUCCGuaCCCg -3'
miRNA:   3'- aCCA--UGUGUCGGua-GuaCAGGCc-GGG- -5'
24470 5' -55.4 NC_005264.1 + 137212 0.69 0.791296
Target:  5'- cGGaGCGCGGCCccaccgccgcCGUGUuccgcaacgCCGGCCCg -3'
miRNA:   3'- aCCaUGUGUCGGua--------GUACA---------GGCCGGG- -5'
24470 5' -55.4 NC_005264.1 + 136281 0.73 0.612985
Target:  5'- gGGuUGCGCGGCCGUCGUuaCCGuCCCa -3'
miRNA:   3'- aCC-AUGUGUCGGUAGUAcaGGCcGGG- -5'
24470 5' -55.4 NC_005264.1 + 127243 0.67 0.901095
Target:  5'- cGGagACGCGGCCAUCGg--CCGaaGCCg -3'
miRNA:   3'- aCCa-UGUGUCGGUAGUacaGGC--CGGg -5'
24470 5' -55.4 NC_005264.1 + 126134 0.66 0.924689
Target:  5'- cGGUuuccaACGC-GCCGUUAgcgCCGGCCg -3'
miRNA:   3'- aCCA-----UGUGuCGGUAGUacaGGCCGGg -5'
24470 5' -55.4 NC_005264.1 + 125513 0.79 0.301132
Target:  5'- gGGUGCGCGGCCAUCGaGggCCGGUagCCg -3'
miRNA:   3'- aCCAUGUGUCGGUAGUaCa-GGCCG--GG- -5'
24470 5' -55.4 NC_005264.1 + 120590 0.66 0.913366
Target:  5'- --aUGCuACAGCCAUCAcaUGUCCcuGCCg -3'
miRNA:   3'- accAUG-UGUCGGUAGU--ACAGGc-CGGg -5'
24470 5' -55.4 NC_005264.1 + 120215 0.66 0.939878
Target:  5'- gGGUACGCAGCgGacCGggcGUCCgcGGCCa -3'
miRNA:   3'- aCCAUGUGUCGgUa-GUa--CAGG--CCGGg -5'
24470 5' -55.4 NC_005264.1 + 119921 0.7 0.74417
Target:  5'- gGGUGUACGGCCc-CGUGUCgCGGgCCg -3'
miRNA:   3'- aCCAUGUGUCGGuaGUACAG-GCCgGG- -5'
24470 5' -55.4 NC_005264.1 + 118483 0.7 0.753828
Target:  5'- gGGUGCAUAauGCCAUC---UCUGGCCa -3'
miRNA:   3'- aCCAUGUGU--CGGUAGuacAGGCCGGg -5'
24470 5' -55.4 NC_005264.1 + 118144 0.69 0.815323
Target:  5'- gGGUACAUgaacucuaugccguGGCCGccCAUGUCUGGCg- -3'
miRNA:   3'- aCCAUGUG--------------UCGGUa-GUACAGGCCGgg -5'
24470 5' -55.4 NC_005264.1 + 112571 0.66 0.919147
Target:  5'- uUGGUGaucucCGCGGCCAUgGcGUCCccagaGGCCa -3'
miRNA:   3'- -ACCAU-----GUGUCGGUAgUaCAGG-----CCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.