miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24473 5' -58 NC_005264.1 + 41127 0.66 0.866073
Target:  5'- cCUCCUCCGcCACCAcgcugcCCUcgcgGUCGggGCCAg -3'
miRNA:   3'- -GAGGGGGC-GUGGUa-----GGAa---CAGC--UGGU- -5'
24473 5' -58 NC_005264.1 + 113244 0.66 0.866073
Target:  5'- -cCCCCCGU--CGUCCUgGUCG-CCGg -3'
miRNA:   3'- gaGGGGGCGugGUAGGAaCAGCuGGU- -5'
24473 5' -58 NC_005264.1 + 125206 0.66 0.866073
Target:  5'- -aUCUCCGC-CaCGUCCUUGUguagagCGGCCAa -3'
miRNA:   3'- gaGGGGGCGuG-GUAGGAACA------GCUGGU- -5'
24473 5' -58 NC_005264.1 + 160154 0.66 0.866073
Target:  5'- cCUCCUCCGcCACCAcgcugcCCUcgcgGUCGggGCCAg -3'
miRNA:   3'- -GAGGGGGC-GUGGUa-----GGAa---CAGC--UGGU- -5'
24473 5' -58 NC_005264.1 + 67449 0.66 0.866073
Target:  5'- -gCCCCUGCACCAg-Cg---CGGCCAg -3'
miRNA:   3'- gaGGGGGCGUGGUagGaacaGCUGGU- -5'
24473 5' -58 NC_005264.1 + 95219 0.66 0.859382
Target:  5'- -aCCCCUGCGCCcgcguggcgaacaaAaCCUacugaagcuguuauuUGUCGGCCAu -3'
miRNA:   3'- gaGGGGGCGUGG--------------UaGGA---------------ACAGCUGGU- -5'
24473 5' -58 NC_005264.1 + 86180 0.66 0.858629
Target:  5'- uUCUgCCGCACCGguggCCgcaUCGGCCu -3'
miRNA:   3'- gAGGgGGCGUGGUa---GGaacAGCUGGu -5'
24473 5' -58 NC_005264.1 + 37697 0.66 0.850988
Target:  5'- -cCUCCCGCACCugauggacgucAUCCggGUCuGCCGc -3'
miRNA:   3'- gaGGGGGCGUGG-----------UAGGaaCAGcUGGU- -5'
24473 5' -58 NC_005264.1 + 156723 0.66 0.850988
Target:  5'- -cCUCCCGCACCugauggacgucAUCCggGUCuGCCGc -3'
miRNA:   3'- gaGGGGGCGUGG-----------UAGGaaCAGcUGGU- -5'
24473 5' -58 NC_005264.1 + 48544 0.66 0.83514
Target:  5'- gUCCCgCGCGCCcccgucgCCUUcGUCGuCCGc -3'
miRNA:   3'- gAGGGgGCGUGGua-----GGAA-CAGCuGGU- -5'
24473 5' -58 NC_005264.1 + 109234 0.66 0.83514
Target:  5'- uCUCCCaCCGCG-CGUCCUUuUCGuCUAa -3'
miRNA:   3'- -GAGGG-GGCGUgGUAGGAAcAGCuGGU- -5'
24473 5' -58 NC_005264.1 + 142576 0.66 0.83514
Target:  5'- aUCUUCuCGCACCGUCCccugaaUGcCGGCCGc -3'
miRNA:   3'- gAGGGG-GCGUGGUAGGa-----ACaGCUGGU- -5'
24473 5' -58 NC_005264.1 + 7947 0.66 0.83514
Target:  5'- gUCCacggCCGCGgCGUCUUUGUCGcuGCCu -3'
miRNA:   3'- gAGGg---GGCGUgGUAGGAACAGC--UGGu -5'
24473 5' -58 NC_005264.1 + 19244 0.66 0.834328
Target:  5'- --aCCCCGCGCCAUUCUcGUUcccuccgGGCCc -3'
miRNA:   3'- gagGGGGCGUGGUAGGAaCAG-------CUGGu -5'
24473 5' -58 NC_005264.1 + 149332 0.67 0.801375
Target:  5'- uCUCCUCCuuCGCCGUCgCggaaGUCGACCu -3'
miRNA:   3'- -GAGGGGGc-GUGGUAG-Gaa--CAGCUGGu -5'
24473 5' -58 NC_005264.1 + 30305 0.67 0.801375
Target:  5'- uCUCCUCCuuCGCCGUCgCggaaGUCGACCu -3'
miRNA:   3'- -GAGGGGGc-GUGGUAG-Gaa--CAGCUGGu -5'
24473 5' -58 NC_005264.1 + 108238 0.67 0.792546
Target:  5'- gUCCCgCaCGCGCCGaggCCggcGUUGACCAc -3'
miRNA:   3'- gAGGG-G-GCGUGGUa--GGaa-CAGCUGGU- -5'
24473 5' -58 NC_005264.1 + 127109 0.67 0.783578
Target:  5'- cCUCgCCgGCACCAUCCUgacUCGcguaaauuACCAa -3'
miRNA:   3'- -GAGgGGgCGUGGUAGGAac-AGC--------UGGU- -5'
24473 5' -58 NC_005264.1 + 15955 0.67 0.77448
Target:  5'- cCUCCUCCGcCACCGUCCagaaaCGugCGa -3'
miRNA:   3'- -GAGGGGGC-GUGGUAGGaaca-GCugGU- -5'
24473 5' -58 NC_005264.1 + 18384 0.67 0.77448
Target:  5'- uCUCuCCCCGCGCgAUCCUUcGUgGAg-- -3'
miRNA:   3'- -GAG-GGGGCGUGgUAGGAA-CAgCUggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.