miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24473 5' -58 NC_005264.1 + 67449 0.66 0.866073
Target:  5'- -gCCCCUGCACCAg-Cg---CGGCCAg -3'
miRNA:   3'- gaGGGGGCGUGGUagGaacaGCUGGU- -5'
24473 5' -58 NC_005264.1 + 154551 0.68 0.765259
Target:  5'- -gCCCCCGuCGCCcacgggcgCCUUGUUGGCg- -3'
miRNA:   3'- gaGGGGGC-GUGGua------GGAACAGCUGgu -5'
24473 5' -58 NC_005264.1 + 15955 0.67 0.77448
Target:  5'- cCUCCUCCGcCACCGUCCagaaaCGugCGa -3'
miRNA:   3'- -GAGGGGGC-GUGGUAGGaaca-GCugGU- -5'
24473 5' -58 NC_005264.1 + 149332 0.67 0.801375
Target:  5'- uCUCCUCCuuCGCCGUCgCggaaGUCGACCu -3'
miRNA:   3'- -GAGGGGGc-GUGGUAG-Gaa--CAGCUGGu -5'
24473 5' -58 NC_005264.1 + 109234 0.66 0.83514
Target:  5'- uCUCCCaCCGCG-CGUCCUUuUCGuCUAa -3'
miRNA:   3'- -GAGGG-GGCGUgGUAGGAAcAGCuGGU- -5'
24473 5' -58 NC_005264.1 + 142576 0.66 0.83514
Target:  5'- aUCUUCuCGCACCGUCCccugaaUGcCGGCCGc -3'
miRNA:   3'- gAGGGG-GCGUGGUAGGa-----ACaGCUGGU- -5'
24473 5' -58 NC_005264.1 + 7947 0.66 0.83514
Target:  5'- gUCCacggCCGCGgCGUCUUUGUCGcuGCCu -3'
miRNA:   3'- gAGGg---GGCGUgGUAGGAACAGC--UGGu -5'
24473 5' -58 NC_005264.1 + 156723 0.66 0.850988
Target:  5'- -cCUCCCGCACCugauggacgucAUCCggGUCuGCCGc -3'
miRNA:   3'- gaGGGGGCGUGG-----------UAGGaaCAGcUGGU- -5'
24473 5' -58 NC_005264.1 + 95219 0.66 0.859382
Target:  5'- -aCCCCUGCGCCcgcguggcgaacaaAaCCUacugaagcuguuauuUGUCGGCCAu -3'
miRNA:   3'- gaGGGGGCGUGG--------------UaGGA---------------ACAGCUGGU- -5'
24473 5' -58 NC_005264.1 + 65990 0.68 0.765259
Target:  5'- uCUCCUcaaCUGCGCCAUCCgccaUG-CGGCUAa -3'
miRNA:   3'- -GAGGG---GGCGUGGUAGGa---ACaGCUGGU- -5'
24473 5' -58 NC_005264.1 + 156240 0.68 0.755925
Target:  5'- uUUCCCaCGCGCUcgCCguugaccUGUCGGCCc -3'
miRNA:   3'- gAGGGG-GCGUGGuaGGa------ACAGCUGGu -5'
24473 5' -58 NC_005264.1 + 85083 0.68 0.755925
Target:  5'- gUCCgCCGCACCGUUUgUGgUGGCCGg -3'
miRNA:   3'- gAGGgGGCGUGGUAGGaACaGCUGGU- -5'
24473 5' -58 NC_005264.1 + 159662 0.72 0.500398
Target:  5'- cCUUCCCCGCGCCGUCgCgcgcggaggGUCG-CCGu -3'
miRNA:   3'- -GAGGGGGCGUGGUAG-Gaa-------CAGCuGGU- -5'
24473 5' -58 NC_005264.1 + 53749 0.72 0.509893
Target:  5'- gUCUCCgGCGCCGUCCUcGUCuucGCCAc -3'
miRNA:   3'- gAGGGGgCGUGGUAGGAaCAGc--UGGU- -5'
24473 5' -58 NC_005264.1 + 121789 0.72 0.525238
Target:  5'- gUCCCCCgGCGCCGUaCCgucuggggagugGUCGGCCc -3'
miRNA:   3'- gAGGGGG-CGUGGUA-GGaa----------CAGCUGGu -5'
24473 5' -58 NC_005264.1 + 93339 0.71 0.548571
Target:  5'- aCUCCCCCGCA--AUCCgcGUgGACCu -3'
miRNA:   3'- -GAGGGGGCGUggUAGGaaCAgCUGGu -5'
24473 5' -58 NC_005264.1 + 159956 0.71 0.578169
Target:  5'- cCUCCCcgCCGCGCCGcgCCccgGUCGAUCGc -3'
miRNA:   3'- -GAGGG--GGCGUGGUa-GGaa-CAGCUGGU- -5'
24473 5' -58 NC_005264.1 + 109734 0.7 0.648214
Target:  5'- -gCCCCCuCGCCGagcgCCUUGUCcACCAg -3'
miRNA:   3'- gaGGGGGcGUGGUa---GGAACAGcUGGU- -5'
24473 5' -58 NC_005264.1 + 42115 0.68 0.717623
Target:  5'- gUCgCCgGCACCGUCCUccgccCGACCGc -3'
miRNA:   3'- gAGgGGgCGUGGUAGGAaca--GCUGGU- -5'
24473 5' -58 NC_005264.1 + 89050 0.68 0.746485
Target:  5'- -aCCCCUGCGCCAUCUUccaagaGGCCu -3'
miRNA:   3'- gaGGGGGCGUGGUAGGAacag--CUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.