Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24473 | 5' | -58 | NC_005264.1 | + | 125206 | 0.66 | 0.866073 |
Target: 5'- -aUCUCCGC-CaCGUCCUUGUguagagCGGCCAa -3' miRNA: 3'- gaGGGGGCGuG-GUAGGAACA------GCUGGU- -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 40929 | 0.71 | 0.578169 |
Target: 5'- cCUCCCcgCCGCGCCGcgCCccgGUCGAUCGc -3' miRNA: 3'- -GAGGG--GGCGUGGUa-GGaa-CAGCUGGU- -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 40635 | 0.72 | 0.538806 |
Target: 5'- cCUUCCCCGCGCCGUCgCgacgcggaggGUCG-CCGu -3' miRNA: 3'- -GAGGGGGCGUGGUAG-Gaa--------CAGCuGGU- -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 56107 | 1.08 | 0.002515 |
Target: 5'- gCUCCCCCGCACCAUCCUUGUCGACCAc -3' miRNA: 3'- -GAGGGGGCGUGGUAGGAACAGCUGGU- -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 37697 | 0.66 | 0.850988 |
Target: 5'- -cCUCCCGCACCugauggacgucAUCCggGUCuGCCGc -3' miRNA: 3'- gaGGGGGCGUGG-----------UAGGaaCAGcUGGU- -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 48544 | 0.66 | 0.83514 |
Target: 5'- gUCCCgCGCGCCcccgucgCCUUcGUCGuCCGc -3' miRNA: 3'- gAGGGgGCGUGGua-----GGAA-CAGCuGGU- -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 30305 | 0.67 | 0.801375 |
Target: 5'- uCUCCUCCuuCGCCGUCgCggaaGUCGACCu -3' miRNA: 3'- -GAGGGGGc-GUGGUAG-Gaa--CAGCUGGu -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 108238 | 0.67 | 0.792546 |
Target: 5'- gUCCCgCaCGCGCCGaggCCggcGUUGACCAc -3' miRNA: 3'- gAGGG-G-GCGUGGUa--GGaa-CAGCUGGU- -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 35524 | 0.68 | 0.765259 |
Target: 5'- -gCCCCCGuCGCCcacgggcgCCUUGUUGGCg- -3' miRNA: 3'- gaGGGGGC-GUGGua------GGAACAGCUGgu -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 126323 | 0.68 | 0.717623 |
Target: 5'- -gCUCCUGCGCCcgCCUcGUCGagGCCGc -3' miRNA: 3'- gaGGGGGCGUGGuaGGAaCAGC--UGGU- -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 18384 | 0.67 | 0.77448 |
Target: 5'- uCUCuCCCCGCGCgAUCCUUcGUgGAg-- -3' miRNA: 3'- -GAG-GGGGCGUGgUAGGAA-CAgCUggu -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 113244 | 0.66 | 0.866073 |
Target: 5'- -cCCCCCGU--CGUCCUgGUCG-CCGg -3' miRNA: 3'- gaGGGGGCGugGUAGGAaCAGCuGGU- -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 145580 | 0.69 | 0.70785 |
Target: 5'- -gCCUCCGUugacgACCGUCUUUGaagCGACCGa -3' miRNA: 3'- gaGGGGGCG-----UGGUAGGAACa--GCUGGU- -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 41127 | 0.66 | 0.866073 |
Target: 5'- cCUCCUCCGcCACCAcgcugcCCUcgcgGUCGggGCCAg -3' miRNA: 3'- -GAGGGGGC-GUGGUa-----GGAa---CAGC--UGGU- -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 127109 | 0.67 | 0.783578 |
Target: 5'- cCUCgCCgGCACCAUCCUgacUCGcguaaauuACCAa -3' miRNA: 3'- -GAGgGGgCGUGGUAGGAac-AGC--------UGGU- -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 70808 | 0.71 | 0.598097 |
Target: 5'- aCUCCCCCGCcugGCCuugCCuUUGUCG-CUAu -3' miRNA: 3'- -GAGGGGGCG---UGGua-GG-AACAGCuGGU- -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 2763 | 0.72 | 0.525238 |
Target: 5'- gUCCCCCgGCGCCGUaCCgucuggggagugGUCGGCCc -3' miRNA: 3'- gAGGGGG-CGUGGUA-GGaa----------CAGCUGGu -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 86180 | 0.66 | 0.858629 |
Target: 5'- uUCUgCCGCACCGguggCCgcaUCGGCCu -3' miRNA: 3'- gAGGgGGCGUGGUa---GGaacAGCUGGu -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 19244 | 0.66 | 0.834328 |
Target: 5'- --aCCCCGCGCCAUUCUcGUUcccuccgGGCCc -3' miRNA: 3'- gagGGGGCGUGGUAGGAaCAG-------CUGGu -5' |
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24473 | 5' | -58 | NC_005264.1 | + | 37213 | 0.68 | 0.755925 |
Target: 5'- uUUCCCaCGCGCUcgCCguugaccUGUCGGCCc -3' miRNA: 3'- gAGGGG-GCGUGGuaGGa------ACAGCUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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