miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24480 3' -57.1 NC_005264.1 + 49092 1.04 0.004318
Target:  5'- aAAUCGCAUGCCGCCGUCGCACGAGUAu -3'
miRNA:   3'- -UUAGCGUACGGCGGCAGCGUGCUCAU- -5'
24480 3' -57.1 NC_005264.1 + 56322 0.74 0.385028
Target:  5'- --cCGCGcUGCCGCCGUCGCGCa---- -3'
miRNA:   3'- uuaGCGU-ACGGCGGCAGCGUGcucau -5'
24480 3' -57.1 NC_005264.1 + 13206 0.74 0.41062
Target:  5'- cGUCGCc-GCCGCCGUCGC-CGGGc- -3'
miRNA:   3'- uUAGCGuaCGGCGGCAGCGuGCUCau -5'
24480 3' -57.1 NC_005264.1 + 132233 0.74 0.41062
Target:  5'- cGUCGCc-GCCGCCGUCGC-CGGGc- -3'
miRNA:   3'- uUAGCGuaCGGCGGCAGCGuGCUCau -5'
24480 3' -57.1 NC_005264.1 + 57359 0.71 0.572625
Target:  5'- --cCGgAUcGCCGUCGUCGCugGAGg- -3'
miRNA:   3'- uuaGCgUA-CGGCGGCAGCGugCUCau -5'
24480 3' -57.1 NC_005264.1 + 110962 0.71 0.593002
Target:  5'- --cCGCAUGaCCGCCGucUCGCcCGAGg- -3'
miRNA:   3'- uuaGCGUAC-GGCGGC--AGCGuGCUCau -5'
24480 3' -57.1 NC_005264.1 + 121100 0.7 0.602212
Target:  5'- gAAUCGCAgcacauacgccgcUGCCGCC-UgGCGCGAGa- -3'
miRNA:   3'- -UUAGCGU-------------ACGGCGGcAgCGUGCUCau -5'
24480 3' -57.1 NC_005264.1 + 56573 0.7 0.613494
Target:  5'- gGAUCGCGUuaaauCCGCCGUCagcagGCGCGAGc- -3'
miRNA:   3'- -UUAGCGUAc----GGCGGCAG-----CGUGCUCau -5'
24480 3' -57.1 NC_005264.1 + 139804 0.7 0.623764
Target:  5'- --aCGCGUGCCgucgGCCGUCGCGgGAc-- -3'
miRNA:   3'- uuaGCGUACGG----CGGCAGCGUgCUcau -5'
24480 3' -57.1 NC_005264.1 + 113474 0.7 0.654583
Target:  5'- --cCGCggucGUGCCaCgGUCGCGCGAGUGc -3'
miRNA:   3'- uuaGCG----UACGGcGgCAGCGUGCUCAU- -5'
24480 3' -57.1 NC_005264.1 + 69506 0.69 0.661759
Target:  5'- --aCGCGUGCCacGCCGUUagcuggcccuaggaGCACGAGg- -3'
miRNA:   3'- uuaGCGUACGG--CGGCAG--------------CGUGCUCau -5'
24480 3' -57.1 NC_005264.1 + 120823 0.69 0.685239
Target:  5'- cGUCGaCAcUGCCGCCGUgGCcgACGAGc- -3'
miRNA:   3'- uUAGC-GU-ACGGCGGCAgCG--UGCUCau -5'
24480 3' -57.1 NC_005264.1 + 125933 0.69 0.705468
Target:  5'- -uUgGC-UGCUGCCGUUGCGCGAa-- -3'
miRNA:   3'- uuAgCGuACGGCGGCAGCGUGCUcau -5'
24480 3' -57.1 NC_005264.1 + 6907 0.69 0.705468
Target:  5'- -uUgGC-UGCUGCCGUUGCGCGAa-- -3'
miRNA:   3'- uuAgCGuACGGCGGCAGCGUGCUcau -5'
24480 3' -57.1 NC_005264.1 + 117724 0.69 0.714495
Target:  5'- ---aGCGUGCCGagcacagagaaguCCGUCGCgcaguACGAGUAu -3'
miRNA:   3'- uuagCGUACGGC-------------GGCAGCG-----UGCUCAU- -5'
24480 3' -57.1 NC_005264.1 + 133694 0.68 0.725448
Target:  5'- --cCGCGguccuUGCCGCCG-CGCACuGGUGc -3'
miRNA:   3'- uuaGCGU-----ACGGCGGCaGCGUGcUCAU- -5'
24480 3' -57.1 NC_005264.1 + 24903 0.68 0.725448
Target:  5'- -uUCGUAUaGUCG-CGUCGCugGGGUGa -3'
miRNA:   3'- uuAGCGUA-CGGCgGCAGCGugCUCAU- -5'
24480 3' -57.1 NC_005264.1 + 45564 0.68 0.725448
Target:  5'- -uUCGCccGUGUCGgCG-CGCACGAGUc -3'
miRNA:   3'- uuAGCG--UACGGCgGCaGCGUGCUCAu -5'
24480 3' -57.1 NC_005264.1 + 162253 0.68 0.735321
Target:  5'- -cUCGC-UGCCGgaGUCGgGCGAGUc -3'
miRNA:   3'- uuAGCGuACGGCggCAGCgUGCUCAu -5'
24480 3' -57.1 NC_005264.1 + 7067 0.68 0.745104
Target:  5'- --gCGCcgGCCggcGCCGUCGCgcuGCGGGg- -3'
miRNA:   3'- uuaGCGuaCGG---CGGCAGCG---UGCUCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.