miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24480 3' -57.1 NC_005264.1 + 116370 0.66 0.852118
Target:  5'- --cUGUAggGCCuGCCGUCGCGgGAGa- -3'
miRNA:   3'- uuaGCGUa-CGG-CGGCAGCGUgCUCau -5'
24480 3' -57.1 NC_005264.1 + 104200 0.67 0.801379
Target:  5'- uGGUCGaccucGCCGCagagcacgCGUCGCACGGGUc -3'
miRNA:   3'- -UUAGCgua--CGGCG--------GCAGCGUGCUCAu -5'
24480 3' -57.1 NC_005264.1 + 160327 0.67 0.81027
Target:  5'- aAGUCGCcccccgcGCUGaaGUCGCGCGAGg- -3'
miRNA:   3'- -UUAGCGua-----CGGCggCAGCGUGCUCau -5'
24480 3' -57.1 NC_005264.1 + 80578 0.67 0.822442
Target:  5'- -uUCGCgcuccgGUGCCGCCuGUCGCgagccccgaaagcaaACGAGa- -3'
miRNA:   3'- uuAGCG------UACGGCGG-CAGCG---------------UGCUCau -5'
24480 3' -57.1 NC_005264.1 + 4252 0.66 0.827555
Target:  5'- ---aGCcucuUGCCGCCG-CGCAgCGAGUc -3'
miRNA:   3'- uuagCGu---ACGGCGGCaGCGU-GCUCAu -5'
24480 3' -57.1 NC_005264.1 + 124697 0.66 0.827555
Target:  5'- --aCGCAUGCUGCguUCcCACGAGUAc -3'
miRNA:   3'- uuaGCGUACGGCGgcAGcGUGCUCAU- -5'
24480 3' -57.1 NC_005264.1 + 66613 0.66 0.827555
Target:  5'- --cCGCGuUGCCggcGCCGUCGCGgccCGAGg- -3'
miRNA:   3'- uuaGCGU-ACGG---CGGCAGCGU---GCUCau -5'
24480 3' -57.1 NC_005264.1 + 127093 0.66 0.827555
Target:  5'- cGUCGCG-GCCGCaGUCggGCACGGGc- -3'
miRNA:   3'- uUAGCGUaCGGCGgCAG--CGUGCUCau -5'
24480 3' -57.1 NC_005264.1 + 149412 0.66 0.835102
Target:  5'- cGUCGCGUcucggcgGCgGCgGUCGCGCGccGGUGc -3'
miRNA:   3'- uUAGCGUA-------CGgCGgCAGCGUGC--UCAU- -5'
24480 3' -57.1 NC_005264.1 + 38850 0.67 0.792334
Target:  5'- ---aGCGUGCCuaCGUCGCggagcuccucGCGGGUGu -3'
miRNA:   3'- uuagCGUACGGcgGCAGCG----------UGCUCAU- -5'
24480 3' -57.1 NC_005264.1 + 30988 0.68 0.76436
Target:  5'- -uUCGCGUggaacacgaGCCgGuuGUCGUACGAGUc -3'
miRNA:   3'- uuAGCGUA---------CGG-CggCAGCGUGCUCAu -5'
24480 3' -57.1 NC_005264.1 + 126094 0.68 0.745104
Target:  5'- --gCGCcgGCCggcGCCGUCGCgcuGCGGGg- -3'
miRNA:   3'- uuaGCGuaCGG---CGGCAGCG---UGCUCau -5'
24480 3' -57.1 NC_005264.1 + 132233 0.74 0.41062
Target:  5'- cGUCGCc-GCCGCCGUCGC-CGGGc- -3'
miRNA:   3'- uUAGCGuaCGGCGGCAGCGuGCUCau -5'
24480 3' -57.1 NC_005264.1 + 57359 0.71 0.572625
Target:  5'- --cCGgAUcGCCGUCGUCGCugGAGg- -3'
miRNA:   3'- uuaGCgUA-CGGCGGCAGCGugCUCau -5'
24480 3' -57.1 NC_005264.1 + 113474 0.7 0.654583
Target:  5'- --cCGCggucGUGCCaCgGUCGCGCGAGUGc -3'
miRNA:   3'- uuaGCG----UACGGcGgCAGCGUGCUCAU- -5'
24480 3' -57.1 NC_005264.1 + 69506 0.69 0.661759
Target:  5'- --aCGCGUGCCacGCCGUUagcuggcccuaggaGCACGAGg- -3'
miRNA:   3'- uuaGCGUACGG--CGGCAG--------------CGUGCUCau -5'
24480 3' -57.1 NC_005264.1 + 125933 0.69 0.705468
Target:  5'- -uUgGC-UGCUGCCGUUGCGCGAa-- -3'
miRNA:   3'- uuAgCGuACGGCGGCAGCGUGCUcau -5'
24480 3' -57.1 NC_005264.1 + 45564 0.68 0.725448
Target:  5'- -uUCGCccGUGUCGgCG-CGCACGAGUc -3'
miRNA:   3'- uuAGCG--UACGGCgGCaGCGUGCUCAu -5'
24480 3' -57.1 NC_005264.1 + 133694 0.68 0.725448
Target:  5'- --cCGCGguccuUGCCGCCG-CGCACuGGUGc -3'
miRNA:   3'- uuaGCGU-----ACGGCGGCaGCGUGcUCAU- -5'
24480 3' -57.1 NC_005264.1 + 24903 0.68 0.725448
Target:  5'- -uUCGUAUaGUCG-CGUCGCugGGGUGa -3'
miRNA:   3'- uuAGCGUA-CGGCgGCAGCGugCUCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.