Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 123038 | 0.66 | 0.859914 |
Target: 5'- --aUGCGUGCCGCgCaUCGCcaACGAGa- -3' miRNA: 3'- uuaGCGUACGGCG-GcAGCG--UGCUCau -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 56573 | 0.7 | 0.613494 |
Target: 5'- gGAUCGCGUuaaauCCGCCGUCagcagGCGCGAGc- -3' miRNA: 3'- -UUAGCGUAc----GGCGGCAG-----CGUGCUCau -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 110962 | 0.71 | 0.593002 |
Target: 5'- --cCGCAUGaCCGCCGucUCGCcCGAGg- -3' miRNA: 3'- uuaGCGUAC-GGCGGC--AGCGuGCUCau -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 49092 | 1.04 | 0.004318 |
Target: 5'- aAAUCGCAUGCCGCCGUCGCACGAGUAu -3' miRNA: 3'- -UUAGCGUACGGCGGCAGCGUGCUCAU- -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 30385 | 0.66 | 0.835102 |
Target: 5'- cGUCGCGUcucggcgGCgGCgGUCGCGCGccGGUGc -3' miRNA: 3'- uUAGCGUA-------CGgCGgCAGCGUGC--UCAU- -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 8066 | 0.66 | 0.827555 |
Target: 5'- cGUCGCG-GCCGCaGUCggGCACGGGc- -3' miRNA: 3'- uUAGCGUaCGGCGgCAG--CGUGCUCau -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 63261 | 0.67 | 0.818998 |
Target: 5'- ---aGCAUGCCGCUG-CGCuuguccaaGAGUAg -3' miRNA: 3'- uuagCGUACGGCGGCaGCGug------CUCAU- -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 41300 | 0.67 | 0.81027 |
Target: 5'- aAGUCGCcccccgcGCUGaaGUCGCGCGAGg- -3' miRNA: 3'- -UUAGCGua-----CGGCggCAGCGUGCUCau -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 7067 | 0.68 | 0.745104 |
Target: 5'- --gCGCcgGCCggcGCCGUCGCgcuGCGGGg- -3' miRNA: 3'- uuaGCGuaCGG---CGGCAGCG---UGCUCau -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 139804 | 0.7 | 0.623764 |
Target: 5'- --aCGCGUGCCgucgGCCGUCGCGgGAc-- -3' miRNA: 3'- uuaGCGUACGG----CGGCAGCGUgCUcau -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 117724 | 0.69 | 0.714495 |
Target: 5'- ---aGCGUGCCGagcacagagaaguCCGUCGCgcaguACGAGUAu -3' miRNA: 3'- uuagCGUACGGC-------------GGCAGCG-----UGCUCAU- -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 69415 | 0.67 | 0.783143 |
Target: 5'- --gCGCcUGCCGCCGUCG---GAGUAu -3' miRNA: 3'- uuaGCGuACGGCGGCAGCgugCUCAU- -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 3648 | 0.66 | 0.852118 |
Target: 5'- cGUCGCGaugGCCGCCGUCuCgACGAu-- -3' miRNA: 3'- uUAGCGUa--CGGCGGCAGcG-UGCUcau -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 6907 | 0.69 | 0.705468 |
Target: 5'- -uUgGC-UGCUGCCGUUGCGCGAa-- -3' miRNA: 3'- uuAgCGuACGGCGGCAGCGUGCUcau -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 27469 | 0.66 | 0.859914 |
Target: 5'- cAUUGgAgGUCGCCGUCGUacaugaACGAGUAc -3' miRNA: 3'- uUAGCgUaCGGCGGCAGCG------UGCUCAU- -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 131242 | 0.67 | 0.791421 |
Target: 5'- uAGUCGCgaucucgucaaaaGUGcCCGCCGUaacUGCGCGGGg- -3' miRNA: 3'- -UUAGCG-------------UAC-GGCGGCA---GCGUGCUCau -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 120823 | 0.69 | 0.685239 |
Target: 5'- cGUCGaCAcUGCCGCCGUgGCcgACGAGc- -3' miRNA: 3'- uUAGC-GU-ACGGCGGCAgCG--UGCUCau -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 121100 | 0.7 | 0.602212 |
Target: 5'- gAAUCGCAgcacauacgccgcUGCCGCC-UgGCGCGAGa- -3' miRNA: 3'- -UUAGCGU-------------ACGGCGGcAgCGUGCUCau -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 162199 | 0.66 | 0.841685 |
Target: 5'- uAGUCGCcgGUCGCUGUCGUuaucgucgccuccaGCGAa-- -3' miRNA: 3'- -UUAGCGuaCGGCGGCAGCG--------------UGCUcau -5' |
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24480 | 3' | -57.1 | NC_005264.1 | + | 5670 | 0.66 | 0.827555 |
Target: 5'- --aCGCAUGCUGCguUCcCACGAGUAc -3' miRNA: 3'- uuaGCGUACGGCGgcAGcGUGCUCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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