Results 21 - 40 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 131242 | 0.67 | 0.791421 |
Target: 5'- uAGUCGCgaucucgucaaaaGUGcCCGCCGUaacUGCGCGGGg- -3' miRNA: 3'- -UUAGCG-------------UAC-GGCGGCA---GCGUGCUCau -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 69415 | 0.67 | 0.783143 |
Target: 5'- --gCGCcUGCCGCCGUCG---GAGUAu -3' miRNA: 3'- uuaGCGuACGGCGGCAGCgugCUCAU- -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 30988 | 0.68 | 0.76436 |
Target: 5'- -uUCGCGUggaacacgaGCCgGuuGUCGUACGAGUc -3' miRNA: 3'- uuAGCGUA---------CGG-CggCAGCGUGCUCAu -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 126094 | 0.68 | 0.745104 |
Target: 5'- --gCGCcgGCCggcGCCGUCGCgcuGCGGGg- -3' miRNA: 3'- uuaGCGuaCGG---CGGCAGCG---UGCUCau -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 7067 | 0.68 | 0.745104 |
Target: 5'- --gCGCcgGCCggcGCCGUCGCgcuGCGGGg- -3' miRNA: 3'- uuaGCGuaCGG---CGGCAGCG---UGCUCau -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 162253 | 0.68 | 0.735321 |
Target: 5'- -cUCGC-UGCCGgaGUCGgGCGAGUc -3' miRNA: 3'- uuAGCGuACGGCggCAGCgUGCUCAu -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 45564 | 0.68 | 0.725448 |
Target: 5'- -uUCGCccGUGUCGgCG-CGCACGAGUc -3' miRNA: 3'- uuAGCG--UACGGCgGCaGCGUGCUCAu -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 24903 | 0.68 | 0.725448 |
Target: 5'- -uUCGUAUaGUCG-CGUCGCugGGGUGa -3' miRNA: 3'- uuAGCGUA-CGGCgGCAGCGugCUCAU- -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 133694 | 0.68 | 0.725448 |
Target: 5'- --cCGCGguccuUGCCGCCG-CGCACuGGUGc -3' miRNA: 3'- uuaGCGU-----ACGGCGGCaGCGUGcUCAU- -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 117724 | 0.69 | 0.714495 |
Target: 5'- ---aGCGUGCCGagcacagagaaguCCGUCGCgcaguACGAGUAu -3' miRNA: 3'- uuagCGUACGGC-------------GGCAGCG-----UGCUCAU- -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 6907 | 0.69 | 0.705468 |
Target: 5'- -uUgGC-UGCUGCCGUUGCGCGAa-- -3' miRNA: 3'- uuAgCGuACGGCGGCAGCGUGCUcau -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 125933 | 0.69 | 0.705468 |
Target: 5'- -uUgGC-UGCUGCCGUUGCGCGAa-- -3' miRNA: 3'- uuAgCGuACGGCGGCAGCGUGCUcau -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 120823 | 0.69 | 0.685239 |
Target: 5'- cGUCGaCAcUGCCGCCGUgGCcgACGAGc- -3' miRNA: 3'- uUAGC-GU-ACGGCGGCAgCG--UGCUCau -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 69506 | 0.69 | 0.661759 |
Target: 5'- --aCGCGUGCCacGCCGUUagcuggcccuaggaGCACGAGg- -3' miRNA: 3'- uuaGCGUACGG--CGGCAG--------------CGUGCUCau -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 113474 | 0.7 | 0.654583 |
Target: 5'- --cCGCggucGUGCCaCgGUCGCGCGAGUGc -3' miRNA: 3'- uuaGCG----UACGGcGgCAGCGUGCUCAU- -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 139804 | 0.7 | 0.623764 |
Target: 5'- --aCGCGUGCCgucgGCCGUCGCGgGAc-- -3' miRNA: 3'- uuaGCGUACGG----CGGCAGCGUgCUcau -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 56573 | 0.7 | 0.613494 |
Target: 5'- gGAUCGCGUuaaauCCGCCGUCagcagGCGCGAGc- -3' miRNA: 3'- -UUAGCGUAc----GGCGGCAG-----CGUGCUCau -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 121100 | 0.7 | 0.602212 |
Target: 5'- gAAUCGCAgcacauacgccgcUGCCGCC-UgGCGCGAGa- -3' miRNA: 3'- -UUAGCGU-------------ACGGCGGcAgCGUGCUCau -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 110962 | 0.71 | 0.593002 |
Target: 5'- --cCGCAUGaCCGCCGucUCGCcCGAGg- -3' miRNA: 3'- uuaGCGUAC-GGCGGC--AGCGuGCUCau -5' |
|||||||
24480 | 3' | -57.1 | NC_005264.1 | + | 57359 | 0.71 | 0.572625 |
Target: 5'- --cCGgAUcGCCGUCGUCGCugGAGg- -3' miRNA: 3'- uuaGCgUA-CGGCGGCAGCGugCUCau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home