Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24480 | 5' | -56.4 | NC_005264.1 | + | 49129 | 1.12 | 0.001839 |
Target: 5'- uCGUAUUCGUGCGAGGCGCCUCUGCCCa -3' miRNA: 3'- -GCAUAAGCACGCUCCGCGGAGACGGG- -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 154820 | 0.8 | 0.233168 |
Target: 5'- gGUGgcgccgUCGUgGCG-GGCGCCUCUGCCg -3' miRNA: 3'- gCAUa-----AGCA-CGCuCCGCGGAGACGGg -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 35794 | 0.8 | 0.233168 |
Target: 5'- gGUGgcgccgUCGUgGCG-GGCGCCUCUGCCg -3' miRNA: 3'- gCAUa-----AGCA-CGCuCCGCGGAGACGGg -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 116056 | 0.72 | 0.619158 |
Target: 5'- ----cUCGUGCGGGGCGCaguaacgcGCCCa -3' miRNA: 3'- gcauaAGCACGCUCCGCGgaga----CGGG- -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 162816 | 0.71 | 0.679645 |
Target: 5'- cCGUGg--GUGCGGGGCGCaguuUCUGUCg -3' miRNA: 3'- -GCAUaagCACGCUCCGCGg---AGACGGg -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 43790 | 0.71 | 0.679645 |
Target: 5'- cCGUGg--GUGCGGGGCGCaguuUCUGUCg -3' miRNA: 3'- -GCAUaagCACGCUCCGCGg---AGACGGg -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 12578 | 0.71 | 0.669612 |
Target: 5'- cCGUGaaggUCGUGCGAaguGGCGUCUUUGUUg -3' miRNA: 3'- -GCAUa---AGCACGCU---CCGCGGAGACGGg -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 61339 | 0.7 | 0.719315 |
Target: 5'- aGUGUUCG-GCGuuuGGCaCCUCaUGCUCg -3' miRNA: 3'- gCAUAAGCaCGCu--CCGcGGAG-ACGGG- -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 83135 | 0.7 | 0.719315 |
Target: 5'- --------cGCgGAGGCGCgUCUGCCCu -3' miRNA: 3'- gcauaagcaCG-CUCCGCGgAGACGGG- -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 16902 | 0.69 | 0.79459 |
Target: 5'- cCGUcgUCG-GUGAGGC-CCa-UGCCCg -3' miRNA: 3'- -GCAuaAGCaCGCUCCGcGGagACGGG- -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 76089 | 0.69 | 0.78559 |
Target: 5'- ----cUCGUGCucacgaauGAaGCGCCUCaUGCCCa -3' miRNA: 3'- gcauaAGCACG--------CUcCGCGGAG-ACGGG- -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 43310 | 0.69 | 0.78559 |
Target: 5'- aCGUAUcgaucUCGUucGCGAGGgcugcCGCCUCggagcacGCCCu -3' miRNA: 3'- -GCAUA-----AGCA--CGCUCC-----GCGGAGa------CGGG- -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 60960 | 0.69 | 0.79459 |
Target: 5'- cCGUGUUCGUGUGGuugguggucgcGGUGuaCCUgCUGCUCg -3' miRNA: 3'- -GCAUAAGCACGCU-----------CCGC--GGA-GACGGG- -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 108603 | 0.69 | 0.78559 |
Target: 5'- aCGUuggCGcGCGGGGcCGCCUCgacacagGCCUc -3' miRNA: 3'- -GCAuaaGCaCGCUCC-GCGGAGa------CGGG- -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 72693 | 0.68 | 0.837284 |
Target: 5'- --cGUUCGUGaCGcGGCGCaaugCUUUGCCUg -3' miRNA: 3'- gcaUAAGCAC-GCuCCGCG----GAGACGGG- -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 150756 | 0.68 | 0.828249 |
Target: 5'- uGUucgcgUCGUGUaagagcaGGGGCGCCUUUGgCUCg -3' miRNA: 3'- gCAua---AGCACG-------CUCCGCGGAGAC-GGG- -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 31730 | 0.68 | 0.828249 |
Target: 5'- uGUucgcgUCGUGUaagagcaGGGGCGCCUUUGgCUCg -3' miRNA: 3'- gCAua---AGCACG-------CUCCGCGGAGAC-GGG- -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 156288 | 0.67 | 0.853141 |
Target: 5'- -----cCGUGgaCGAGGCGCUcCUGCCg -3' miRNA: 3'- gcauaaGCAC--GCUCCGCGGaGACGGg -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 30845 | 0.67 | 0.860781 |
Target: 5'- gCGUcgUCGUcgGCGGcGGCGCg-CcGCCCg -3' miRNA: 3'- -GCAuaAGCA--CGCU-CCGCGgaGaCGGG- -5' |
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24480 | 5' | -56.4 | NC_005264.1 | + | 113741 | 0.67 | 0.889272 |
Target: 5'- cCGUAUacUCGUGCGAcGGCGgCaugcgauuuUCUGCg- -3' miRNA: 3'- -GCAUA--AGCACGCU-CCGCgG---------AGACGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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