miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24480 5' -56.4 NC_005264.1 + 158720 0.66 0.914243
Target:  5'- cCGUGUUUG-GCaGAGGgGacacCCUCgGCCCc -3'
miRNA:   3'- -GCAUAAGCaCG-CUCCgC----GGAGaCGGG- -5'
24480 5' -56.4 NC_005264.1 + 150598 0.66 0.900328
Target:  5'- -----aCGUG-GAGGCGCCagagguggggcgagUCUGCUCu -3'
miRNA:   3'- gcauaaGCACgCUCCGCGG--------------AGACGGG- -5'
24480 5' -56.4 NC_005264.1 + 36495 0.66 0.902212
Target:  5'- gCGUuUUCGUGCGAaGCGCgCg--GCCUc -3'
miRNA:   3'- -GCAuAAGCACGCUcCGCG-GagaCGGG- -5'
24480 5' -56.4 NC_005264.1 + 68311 0.66 0.902212
Target:  5'- ------aGUGC--GGCGCCgCUGCCCu -3'
miRNA:   3'- gcauaagCACGcuCCGCGGaGACGGG- -5'
24480 5' -56.4 NC_005264.1 + 131093 0.66 0.902212
Target:  5'- ------gGUGCGAgccaaaGGCGCCcCUGCUCu -3'
miRNA:   3'- gcauaagCACGCU------CCGCGGaGACGGG- -5'
24480 5' -56.4 NC_005264.1 + 139933 0.66 0.902212
Target:  5'- aGgacagCGUGCGAGaagagacccucGgGCC-CUGCCCg -3'
miRNA:   3'- gCauaa-GCACGCUC-----------CgCGGaGACGGG- -5'
24480 5' -56.4 NC_005264.1 + 246 0.66 0.902212
Target:  5'- --gGUUUGUGCGGcGGCGCUggacgCggcagaaGCCCa -3'
miRNA:   3'- gcaUAAGCACGCU-CCGCGGa----Ga------CGGG- -5'
24480 5' -56.4 NC_005264.1 + 75266 0.66 0.902212
Target:  5'- cCGUGUUCGUccuCGucGGCGCUUUgcugGUCCg -3'
miRNA:   3'- -GCAUAAGCAc--GCu-CCGCGGAGa---CGGG- -5'
24480 5' -56.4 NC_005264.1 + 125229 0.66 0.914243
Target:  5'- -----cCGUGCGAGacGCGuCCUUUGaCCCc -3'
miRNA:   3'- gcauaaGCACGCUC--CGC-GGAGAC-GGG- -5'
24480 5' -56.4 NC_005264.1 + 113741 0.67 0.889272
Target:  5'- cCGUAUacUCGUGCGAcGGCGgCaugcgauuuUCUGCg- -3'
miRNA:   3'- -GCAUA--AGCACGCU-CCGCgG---------AGACGgg -5'
24480 5' -56.4 NC_005264.1 + 149871 0.67 0.860781
Target:  5'- gCGUcgUCGUcgGCGGcGGCGCg-CcGCCCg -3'
miRNA:   3'- -GCAuaAGCA--CGCU-CCGCGgaGaCGGG- -5'
24480 5' -56.4 NC_005264.1 + 156288 0.67 0.853141
Target:  5'- -----cCGUGgaCGAGGCGCUcCUGCCg -3'
miRNA:   3'- gcauaaGCAC--GCUCCGCGGaGACGGg -5'
24480 5' -56.4 NC_005264.1 + 116056 0.72 0.619158
Target:  5'- ----cUCGUGCGGGGCGCaguaacgcGCCCa -3'
miRNA:   3'- gcauaAGCACGCUCCGCGgaga----CGGG- -5'
24480 5' -56.4 NC_005264.1 + 12578 0.71 0.669612
Target:  5'- cCGUGaaggUCGUGCGAaguGGCGUCUUUGUUg -3'
miRNA:   3'- -GCAUa---AGCACGCU---CCGCGGAGACGGg -5'
24480 5' -56.4 NC_005264.1 + 162816 0.71 0.679645
Target:  5'- cCGUGg--GUGCGGGGCGCaguuUCUGUCg -3'
miRNA:   3'- -GCAUaagCACGCUCCGCGg---AGACGGg -5'
24480 5' -56.4 NC_005264.1 + 108603 0.69 0.78559
Target:  5'- aCGUuggCGcGCGGGGcCGCCUCgacacagGCCUc -3'
miRNA:   3'- -GCAuaaGCaCGCUCC-GCGGAGa------CGGG- -5'
24480 5' -56.4 NC_005264.1 + 43310 0.69 0.78559
Target:  5'- aCGUAUcgaucUCGUucGCGAGGgcugcCGCCUCggagcacGCCCu -3'
miRNA:   3'- -GCAUA-----AGCA--CGCUCC-----GCGGAGa------CGGG- -5'
24480 5' -56.4 NC_005264.1 + 76089 0.69 0.78559
Target:  5'- ----cUCGUGCucacgaauGAaGCGCCUCaUGCCCa -3'
miRNA:   3'- gcauaAGCACG--------CUcCGCGGAG-ACGGG- -5'
24480 5' -56.4 NC_005264.1 + 150756 0.68 0.828249
Target:  5'- uGUucgcgUCGUGUaagagcaGGGGCGCCUUUGgCUCg -3'
miRNA:   3'- gCAua---AGCACG-------CUCCGCGGAGAC-GGG- -5'
24480 5' -56.4 NC_005264.1 + 72693 0.68 0.837284
Target:  5'- --cGUUCGUGaCGcGGCGCaaugCUUUGCCUg -3'
miRNA:   3'- gcaUAAGCAC-GCuCCGCG----GAGACGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.