miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24480 5' -56.4 NC_005264.1 + 39694 0.66 0.914243
Target:  5'- cCGUGUUUG-GCaGAGGgGacacCCUCgGCCCc -3'
miRNA:   3'- -GCAUAAGCaCG-CUCCgC----GGAGaCGGG- -5'
24480 5' -56.4 NC_005264.1 + 83135 0.7 0.719315
Target:  5'- --------cGCgGAGGCGCgUCUGCCCu -3'
miRNA:   3'- gcauaagcaCG-CUCCGCGgAGACGGG- -5'
24480 5' -56.4 NC_005264.1 + 31730 0.68 0.828249
Target:  5'- uGUucgcgUCGUGUaagagcaGGGGCGCCUUUGgCUCg -3'
miRNA:   3'- gCAua---AGCACG-------CUCCGCGGAGAC-GGG- -5'
24480 5' -56.4 NC_005264.1 + 37261 0.67 0.853141
Target:  5'- -----cCGUGgaCGAGGCGCUcCUGCCg -3'
miRNA:   3'- gcauaaGCAC--GCUCCGCGGaGACGGg -5'
24480 5' -56.4 NC_005264.1 + 95767 0.67 0.87545
Target:  5'- uGUAcgcggCGUGCGAguacucguuccaGGCGCUUCcGCCg -3'
miRNA:   3'- gCAUaa---GCACGCU------------CCGCGGAGaCGGg -5'
24480 5' -56.4 NC_005264.1 + 31571 0.66 0.900328
Target:  5'- -----aCGUG-GAGGCGCCagagguggggcgagUCUGCUCu -3'
miRNA:   3'- gcauaaGCACgCUCCGCGG--------------AGACGGG- -5'
24480 5' -56.4 NC_005264.1 + 43790 0.71 0.679645
Target:  5'- cCGUGg--GUGCGGGGCGCaguuUCUGUCg -3'
miRNA:   3'- -GCAUaagCACGCUCCGCGg---AGACGGg -5'
24480 5' -56.4 NC_005264.1 + 16902 0.69 0.79459
Target:  5'- cCGUcgUCG-GUGAGGC-CCa-UGCCCg -3'
miRNA:   3'- -GCAuaAGCaCGCUCCGcGGagACGGG- -5'
24480 5' -56.4 NC_005264.1 + 30845 0.67 0.860781
Target:  5'- gCGUcgUCGUcgGCGGcGGCGCg-CcGCCCg -3'
miRNA:   3'- -GCAuaAGCA--CGCU-CCGCGgaGaCGGG- -5'
24480 5' -56.4 NC_005264.1 + 12066 0.66 0.902212
Target:  5'- ------gGUGCGAgccaaaGGCGCCcCUGCUCu -3'
miRNA:   3'- gcauaagCACGCU------CCGCGGaGACGGG- -5'
24480 5' -56.4 NC_005264.1 + 6202 0.66 0.914243
Target:  5'- -----cCGUGCGAGacGCGuCCUUUGaCCCc -3'
miRNA:   3'- gcauaaGCACGCUC--CGC-GGAGAC-GGG- -5'
24480 5' -56.4 NC_005264.1 + 35794 0.8 0.233168
Target:  5'- gGUGgcgccgUCGUgGCG-GGCGCCUCUGCCg -3'
miRNA:   3'- gCAUa-----AGCA-CGCuCCGCGGAGACGGg -5'
24480 5' -56.4 NC_005264.1 + 95352 0.66 0.914243
Target:  5'- aCGgacUCG-GCGGGGCGgCg--GCCCg -3'
miRNA:   3'- -GCauaAGCaCGCUCCGCgGagaCGGG- -5'
24480 5' -56.4 NC_005264.1 + 60960 0.69 0.79459
Target:  5'- cCGUGUUCGUGUGGuugguggucgcGGUGuaCCUgCUGCUCg -3'
miRNA:   3'- -GCAUAAGCACGCU-----------CCGC--GGA-GACGGG- -5'
24480 5' -56.4 NC_005264.1 + 49129 1.12 0.001839
Target:  5'- uCGUAUUCGUGCGAGGCGCCUCUGCCCa -3'
miRNA:   3'- -GCAUAAGCACGCUCCGCGGAGACGGG- -5'
24480 5' -56.4 NC_005264.1 + 61339 0.7 0.719315
Target:  5'- aGUGUUCG-GCGuuuGGCaCCUCaUGCUCg -3'
miRNA:   3'- gCAUAAGCaCGCu--CCGcGGAG-ACGGG- -5'
24480 5' -56.4 NC_005264.1 + 68311 0.66 0.902212
Target:  5'- ------aGUGC--GGCGCCgCUGCCCu -3'
miRNA:   3'- gcauaagCACGcuCCGCGGaGACGGG- -5'
24480 5' -56.4 NC_005264.1 + 36495 0.66 0.902212
Target:  5'- gCGUuUUCGUGCGAaGCGCgCg--GCCUc -3'
miRNA:   3'- -GCAuAAGCACGCUcCGCG-GagaCGGG- -5'
24480 5' -56.4 NC_005264.1 + 150598 0.66 0.900328
Target:  5'- -----aCGUG-GAGGCGCCagagguggggcgagUCUGCUCu -3'
miRNA:   3'- gcauaaGCACgCUCCGCGG--------------AGACGGG- -5'
24480 5' -56.4 NC_005264.1 + 113741 0.67 0.889272
Target:  5'- cCGUAUacUCGUGCGAcGGCGgCaugcgauuuUCUGCg- -3'
miRNA:   3'- -GCAUA--AGCACGCU-CCGCgG---------AGACGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.