miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24486 5' -57.4 NC_005264.1 + 3631 0.69 0.764999
Target:  5'- gGGCGGGGUGG-GGGUuUCugggaGGCGGu -3'
miRNA:   3'- -CCGCCCCAUUgCCUAcAGug---CCGCCu -5'
24486 5' -57.4 NC_005264.1 + 149425 0.68 0.783187
Target:  5'- cGGCGGcGGUcgcgcgccgguGCGGAgagCuGCGGCGGAg -3'
miRNA:   3'- -CCGCC-CCAu----------UGCCUacaG-UGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 31690 0.66 0.870979
Target:  5'- cGGCGGGGcuGCccgccaaagGUCGCGcGCGGGg -3'
miRNA:   3'- -CCGCCCCauUGccua-----CAGUGC-CGCCU- -5'
24486 5' -57.4 NC_005264.1 + 151886 0.67 0.857783
Target:  5'- cGCGGGcaucagcuguauGUGGCGGAgGggACGGCGGc -3'
miRNA:   3'- cCGCCC------------CAUUGCCUaCagUGCCGCCu -5'
24486 5' -57.4 NC_005264.1 + 31528 0.67 0.857783
Target:  5'- gGGCGGGGagGGCcguuGGG-GUgGgGGCGGAc -3'
miRNA:   3'- -CCGCCCCa-UUG----CCUaCAgUgCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 30398 0.68 0.783187
Target:  5'- cGGCGGcGGUcgcgcgccgguGCGGAgagCuGCGGCGGAg -3'
miRNA:   3'- -CCGCC-CCAu----------UGCCUacaG-UGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 19025 0.68 0.783187
Target:  5'- aGCGGGcGUGAUGGAcGgCA-GGCGGGa -3'
miRNA:   3'- cCGCCC-CAUUGCCUaCaGUgCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 56533 0.69 0.764999
Target:  5'- cGGCGGcacaGGUGAUGG-UG-C-CGGCGGGg -3'
miRNA:   3'- -CCGCC----CCAUUGCCuACaGuGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 41901 0.69 0.764999
Target:  5'- -cCGGaGG-AugGGAUccgcaGUCGCGGCGGGg -3'
miRNA:   3'- ccGCC-CCaUugCCUA-----CAGUGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 44121 0.69 0.755733
Target:  5'- gGGCGGGaUAGCGGcgaUUACGaGCGGGa -3'
miRNA:   3'- -CCGCCCcAUUGCCuacAGUGC-CGCCU- -5'
24486 5' -57.4 NC_005264.1 + 33662 0.66 0.872405
Target:  5'- aGC-GGGUGGCGGGUaugaaUCugGgGCGGAg -3'
miRNA:   3'- cCGcCCCAUUGCCUAc----AGugC-CGCCU- -5'
24486 5' -57.4 NC_005264.1 + 108165 0.66 0.872405
Target:  5'- cGCGGGG-AGCGuaauGAUGUCcccaguCGGCGcGAc -3'
miRNA:   3'- cCGCCCCaUUGC----CUACAGu-----GCCGC-CU- -5'
24486 5' -57.4 NC_005264.1 + 46583 1.11 0.001959
Target:  5'- cGGCGGGGUAACGGAUGUCACGGCGGAg -3'
miRNA:   3'- -CCGCCCCAUUGCCUACAGUGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 126109 0.66 0.899171
Target:  5'- aGGCGGGcaa--GGaAUG-CGCGGCGGc -3'
miRNA:   3'- -CCGCCCcauugCC-UACaGUGCCGCCu -5'
24486 5' -57.4 NC_005264.1 + 91563 0.66 0.899171
Target:  5'- cGGCGGGGggcACGaGGcuUGUCGCGGa--- -3'
miRNA:   3'- -CCGCCCCau-UGC-CU--ACAGUGCCgccu -5'
24486 5' -57.4 NC_005264.1 + 83167 0.66 0.899171
Target:  5'- cGCGGGG-AugGGGagaauuUGUCAgCGGCaGGc -3'
miRNA:   3'- cCGCCCCaUugCCU------ACAGU-GCCGcCU- -5'
24486 5' -57.4 NC_005264.1 + 52565 0.66 0.899171
Target:  5'- gGGCGGu---GCGGAUGgCACGGCu-- -3'
miRNA:   3'- -CCGCCccauUGCCUACaGUGCCGccu -5'
24486 5' -57.4 NC_005264.1 + 155240 0.66 0.895374
Target:  5'- cGGCGGGGgaugAggaagcaucuccgcaGCGGcgcgggGUagGCGGCGGGg -3'
miRNA:   3'- -CCGCCCCa---U---------------UGCCua----CAg-UGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 4076 0.66 0.8928
Target:  5'- aGCGGGGcUGuugcACGGGcggcGUCGCGGCa-- -3'
miRNA:   3'- cCGCCCC-AU----UGCCUa---CAGUGCCGccu -5'
24486 5' -57.4 NC_005264.1 + 74105 0.66 0.886213
Target:  5'- uGGCGcGGUcGACGc-UGUCGCGGCuGGGg -3'
miRNA:   3'- -CCGCcCCA-UUGCcuACAGUGCCG-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.