miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24486 5' -57.4 NC_005264.1 + 47207 0.66 0.899171
Target:  5'- aGCGGGGccACGGccGUCGauggcUGGuCGGAg -3'
miRNA:   3'- cCGCCCCauUGCCuaCAGU-----GCC-GCCU- -5'
24486 5' -57.4 NC_005264.1 + 28406 0.67 0.834418
Target:  5'- gGGCGuGGGU-AUGcGUGUCGCGGgguaGGAc -3'
miRNA:   3'- -CCGC-CCCAuUGCcUACAGUGCCg---CCU- -5'
24486 5' -57.4 NC_005264.1 + 83712 0.67 0.842389
Target:  5'- uGCGGuGGcGGCGGcuagGUaCGCGGCGGc -3'
miRNA:   3'- cCGCC-CCaUUGCCua--CA-GUGCCGCCu -5'
24486 5' -57.4 NC_005264.1 + 150555 0.67 0.857783
Target:  5'- gGGCGGGGagGGCcguuGGG-GUgGgGGCGGAc -3'
miRNA:   3'- -CCGCCCCa-UUG----CCUaCAgUgCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 150716 0.66 0.870979
Target:  5'- cGGCGGGGcuGCccgccaaagGUCGCGcGCGGGg -3'
miRNA:   3'- -CCGCCCCauUGccua-----CAGUGC-CGCCU- -5'
24486 5' -57.4 NC_005264.1 + 139396 0.66 0.872405
Target:  5'- -uUGGGGaauACGGAac-CGCGGCGGGa -3'
miRNA:   3'- ccGCCCCau-UGCCUacaGUGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 123103 0.66 0.8928
Target:  5'- aGCGGGGcUGuugcACGGGcggcGUCGCGGCa-- -3'
miRNA:   3'- cCGCCCC-AU----UGCCUa---CAGUGCCGccu -5'
24486 5' -57.4 NC_005264.1 + 57483 0.66 0.8928
Target:  5'- uGGCGGcGGcGGCGaaGAUGcuggcgcgCGCGGCGGc -3'
miRNA:   3'- -CCGCC-CCaUUGC--CUACa-------GUGCCGCCu -5'
24486 5' -57.4 NC_005264.1 + 91887 0.66 0.898543
Target:  5'- aGCGGGGUGguuggccGCGGcagcgAUGggcgggCGCGGCGa- -3'
miRNA:   3'- cCGCCCCAU-------UGCC-----UACa-----GUGCCGCcu -5'
24486 5' -57.4 NC_005264.1 + 152689 0.67 0.826272
Target:  5'- aGCGGGG--GCGGGUaugaaUCugGgGCGGAg -3'
miRNA:   3'- cCGCCCCauUGCCUAc----AGugC-CGCCU- -5'
24486 5' -57.4 NC_005264.1 + 160927 0.68 0.800862
Target:  5'- -cCGGaGG-AugGGAUcccgcaGUCGCGGCGGGg -3'
miRNA:   3'- ccGCC-CCaUugCCUA------CAGUGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 149425 0.68 0.783187
Target:  5'- cGGCGGcGGUcgcgcgccgguGCGGAgagCuGCGGCGGAg -3'
miRNA:   3'- -CCGCC-CCAu----------UGCCUacaG-UGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 154807 0.72 0.569489
Target:  5'- aGGCGGaGGgcGCGGuggcgccGUCGUGGCGGGc -3'
miRNA:   3'- -CCGCC-CCauUGCCua-----CAGUGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 71832 0.72 0.589206
Target:  5'- cGCGGGGUcgcgaauaacGACGc--GUCGCGGCGGc -3'
miRNA:   3'- cCGCCCCA----------UUGCcuaCAGUGCCGCCu -5'
24486 5' -57.4 NC_005264.1 + 68138 0.71 0.618986
Target:  5'- cGGCGGGGaugucgguaGGCGGuucGUGcaacaucugcaUCACGGCGGGc -3'
miRNA:   3'- -CCGCCCCa--------UUGCC---UAC-----------AGUGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 123501 0.7 0.688455
Target:  5'- gGGCGGGaaacaGUcGCGcGAggGUCGCGaGCGGAg -3'
miRNA:   3'- -CCGCCC-----CAuUGC-CUa-CAGUGC-CGCCU- -5'
24486 5' -57.4 NC_005264.1 + 156607 0.7 0.708024
Target:  5'- aGGCGGcaaGUcucGCGGcgGcCGCGGCGGGg -3'
miRNA:   3'- -CCGCCc--CAu--UGCCuaCaGUGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 124313 0.7 0.717721
Target:  5'- cGGCGGGGcGGCGGcUGacccgUggGGCGGGc -3'
miRNA:   3'- -CCGCCCCaUUGCCuACa----GugCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 122429 0.7 0.717721
Target:  5'- cGCGGGGU--CGG-UG-CGCGGgGGAg -3'
miRNA:   3'- cCGCCCCAuuGCCuACaGUGCCgCCU- -5'
24486 5' -57.4 NC_005264.1 + 3631 0.69 0.764999
Target:  5'- gGGCGGGGUGG-GGGUuUCugggaGGCGGu -3'
miRNA:   3'- -CCGCCCCAUUgCCUAcAGug---CCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.