Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24486 | 5' | -57.4 | NC_005264.1 | + | 46583 | 1.11 | 0.001959 |
Target: 5'- cGGCGGGGUAACGGAUGUCACGGCGGAg -3' miRNA: 3'- -CCGCCCCAUUGCCUACAGUGCCGCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 162236 | 0.76 | 0.363785 |
Target: 5'- cGGCGGGGggGGgGGggGcUACGGCGGGg -3' miRNA: 3'- -CCGCCCCa-UUgCCuaCaGUGCCGCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 43209 | 0.76 | 0.363785 |
Target: 5'- cGGCGGGGggGGgGGggGcUACGGCGGGg -3' miRNA: 3'- -CCGCCCCa-UUgCCuaCaGUGCCGCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 79402 | 0.74 | 0.456134 |
Target: 5'- cGCGGGcGUGGCGag-GcCGCGGCGGAa -3' miRNA: 3'- cCGCCC-CAUUGCcuaCaGUGCCGCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 21293 | 0.74 | 0.465146 |
Target: 5'- aGCGGGGgacGCGGAc--CAUGGCGGAc -3' miRNA: 3'- cCGCCCCau-UGCCUacaGUGCCGCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 154807 | 0.72 | 0.569489 |
Target: 5'- aGGCGGaGGgcGCGGuggcgccGUCGUGGCGGGc -3' miRNA: 3'- -CCGCC-CCauUGCCua-----CAGUGCCGCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 35781 | 0.72 | 0.569489 |
Target: 5'- aGGCGGaGGgcGCGGuggcgccGUCGUGGCGGGc -3' miRNA: 3'- -CCGCC-CCauUGCCua-----CAGUGCCGCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 109630 | 0.72 | 0.589206 |
Target: 5'- gGGCGGGGggcgcGACGGuUGcaacUCGCGGCcccGGAg -3' miRNA: 3'- -CCGCCCCa----UUGCCuAC----AGUGCCG---CCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 71832 | 0.72 | 0.589206 |
Target: 5'- cGCGGGGUcgcgaauaacGACGc--GUCGCGGCGGc -3' miRNA: 3'- cCGCCCCA----------UUGCcuaCAGUGCCGCCu -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 130264 | 0.71 | 0.609041 |
Target: 5'- gGGCGcGGGU-GCGcGAcGUUGCGGCGGc -3' miRNA: 3'- -CCGC-CCCAuUGC-CUaCAGUGCCGCCu -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 68138 | 0.71 | 0.618986 |
Target: 5'- cGGCGGGGaugucgguaGGCGGuucGUGcaacaucugcaUCACGGCGGGc -3' miRNA: 3'- -CCGCCCCa--------UUGCC---UAC-----------AGUGCCGCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 4474 | 0.7 | 0.688455 |
Target: 5'- gGGCGGGaaacaGUcGCGcGAggGUCGCGaGCGGAg -3' miRNA: 3'- -CCGCCC-----CAuUGC-CUa-CAGUGC-CGCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 123501 | 0.7 | 0.688455 |
Target: 5'- gGGCGGGaaacaGUcGCGcGAggGUCGCGaGCGGAg -3' miRNA: 3'- -CCGCCC-----CAuUGC-CUa-CAGUGC-CGCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 156607 | 0.7 | 0.708024 |
Target: 5'- aGGCGGcaaGUcucGCGGcgGcCGCGGCGGGg -3' miRNA: 3'- -CCGCCc--CAu--UGCCuaCaGUGCCGCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 37580 | 0.7 | 0.708024 |
Target: 5'- aGGCGGcaaGUcucGCGGcgGcCGCGGCGGGg -3' miRNA: 3'- -CCGCCc--CAu--UGCCuaCaGUGCCGCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 122429 | 0.7 | 0.717721 |
Target: 5'- cGCGGGGU--CGG-UG-CGCGGgGGAg -3' miRNA: 3'- cCGCCCCAuuGCCuACaGUGCCgCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 5286 | 0.7 | 0.717721 |
Target: 5'- cGGCGGGGcGGCGGcUGacccgUggGGCGGGc -3' miRNA: 3'- -CCGCCCCaUUGCCuACa----GugCCGCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 3402 | 0.7 | 0.717721 |
Target: 5'- cGCGGGGU--CGG-UG-CGCGGgGGAg -3' miRNA: 3'- cCGCCCCAuuGCCuACaGUGCCgCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 124313 | 0.7 | 0.717721 |
Target: 5'- cGGCGGGGcGGCGGcUGacccgUggGGCGGGc -3' miRNA: 3'- -CCGCCCCaUUGCCuACa----GugCCGCCU- -5' |
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24486 | 5' | -57.4 | NC_005264.1 | + | 44121 | 0.69 | 0.755733 |
Target: 5'- gGGCGGGaUAGCGGcgaUUACGaGCGGGa -3' miRNA: 3'- -CCGCCCcAUUGCCuacAGUGC-CGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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