miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24486 5' -57.4 NC_005264.1 + 3402 0.7 0.717721
Target:  5'- cGCGGGGU--CGG-UG-CGCGGgGGAg -3'
miRNA:   3'- cCGCCCCAuuGCCuACaGUGCCgCCU- -5'
24486 5' -57.4 NC_005264.1 + 3631 0.69 0.764999
Target:  5'- gGGCGGGGUGG-GGGUuUCugggaGGCGGu -3'
miRNA:   3'- -CCGCCCCAUUgCCUAcAGug---CCGCCu -5'
24486 5' -57.4 NC_005264.1 + 4076 0.66 0.8928
Target:  5'- aGCGGGGcUGuugcACGGGcggcGUCGCGGCa-- -3'
miRNA:   3'- cCGCCCC-AU----UGCCUa---CAGUGCCGccu -5'
24486 5' -57.4 NC_005264.1 + 4474 0.7 0.688455
Target:  5'- gGGCGGGaaacaGUcGCGcGAggGUCGCGaGCGGAg -3'
miRNA:   3'- -CCGCCC-----CAuUGC-CUa-CAGUGC-CGCCU- -5'
24486 5' -57.4 NC_005264.1 + 5286 0.7 0.717721
Target:  5'- cGGCGGGGcGGCGGcUGacccgUggGGCGGGc -3'
miRNA:   3'- -CCGCCCCaUUGCCuACa----GugCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 19025 0.68 0.783187
Target:  5'- aGCGGGcGUGAUGGAcGgCA-GGCGGGa -3'
miRNA:   3'- cCGCCC-CAUUGCCUaCaGUgCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 21293 0.74 0.465146
Target:  5'- aGCGGGGgacGCGGAc--CAUGGCGGAc -3'
miRNA:   3'- cCGCCCCau-UGCCUacaGUGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 28340 0.66 0.899171
Target:  5'- cGGCGuacGGGUAGCGGgcGaCACGcGCaauuGGAg -3'
miRNA:   3'- -CCGC---CCCAUUGCCuaCaGUGC-CG----CCU- -5'
24486 5' -57.4 NC_005264.1 + 28406 0.67 0.834418
Target:  5'- gGGCGuGGGU-AUGcGUGUCGCGGgguaGGAc -3'
miRNA:   3'- -CCGC-CCCAuUGCcUACAGUGCCg---CCU- -5'
24486 5' -57.4 NC_005264.1 + 30398 0.68 0.783187
Target:  5'- cGGCGGcGGUcgcgcgccgguGCGGAgagCuGCGGCGGAg -3'
miRNA:   3'- -CCGCC-CCAu----------UGCCUacaG-UGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 31528 0.67 0.857783
Target:  5'- gGGCGGGGagGGCcguuGGG-GUgGgGGCGGAc -3'
miRNA:   3'- -CCGCCCCa-UUG----CCUaCAgUgCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 31690 0.66 0.870979
Target:  5'- cGGCGGGGcuGCccgccaaagGUCGCGcGCGGGg -3'
miRNA:   3'- -CCGCCCCauUGccua-----CAGUGC-CGCCU- -5'
24486 5' -57.4 NC_005264.1 + 33662 0.66 0.872405
Target:  5'- aGC-GGGUGGCGGGUaugaaUCugGgGCGGAg -3'
miRNA:   3'- cCGcCCCAUUGCCUAc----AGugC-CGCCU- -5'
24486 5' -57.4 NC_005264.1 + 35781 0.72 0.569489
Target:  5'- aGGCGGaGGgcGCGGuggcgccGUCGUGGCGGGc -3'
miRNA:   3'- -CCGCC-CCauUGCCua-----CAGUGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 37580 0.7 0.708024
Target:  5'- aGGCGGcaaGUcucGCGGcgGcCGCGGCGGGg -3'
miRNA:   3'- -CCGCCc--CAu--UGCCuaCaGUGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 41901 0.69 0.764999
Target:  5'- -cCGGaGG-AugGGAUccgcaGUCGCGGCGGGg -3'
miRNA:   3'- ccGCC-CCaUugCCUA-----CAGUGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 43209 0.76 0.363785
Target:  5'- cGGCGGGGggGGgGGggGcUACGGCGGGg -3'
miRNA:   3'- -CCGCCCCa-UUgCCuaCaGUGCCGCCU- -5'
24486 5' -57.4 NC_005264.1 + 43864 0.66 0.905322
Target:  5'- cGCGGGGaagaGACGGAacgagCGCGGCaaaGGGg -3'
miRNA:   3'- cCGCCCCa---UUGCCUaca--GUGCCG---CCU- -5'
24486 5' -57.4 NC_005264.1 + 44121 0.69 0.755733
Target:  5'- gGGCGGGaUAGCGGcgaUUACGaGCGGGa -3'
miRNA:   3'- -CCGCCCcAUUGCCuacAGUGC-CGCCU- -5'
24486 5' -57.4 NC_005264.1 + 46583 1.11 0.001959
Target:  5'- cGGCGGGGUAACGGAUGUCACGGCGGAg -3'
miRNA:   3'- -CCGCCCCAUUGCCUACAGUGCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.