miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 3' -55.4 NC_005264.1 + 147891 0.67 0.901118
Target:  5'- aUGgcCUCcagGUCG-GCuGCCGCGUAGACg -3'
miRNA:   3'- -ACauGAG---CAGUaCG-CGGCGCGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 108512 0.67 0.901118
Target:  5'- gGUACggCGUCGUGCGCCaccacCGUGGcACa -3'
miRNA:   3'- aCAUGa-GCAGUACGCGGc----GCGUC-UGg -5'
24487 3' -55.4 NC_005264.1 + 143958 0.67 0.901118
Target:  5'- ---uCUCGUCAcaaGCCGCGguGGCa -3'
miRNA:   3'- acauGAGCAGUacgCGGCGCguCUGg -5'
24487 3' -55.4 NC_005264.1 + 51791 0.67 0.894661
Target:  5'- --cACuUCGUCcgGCGaguCCGCGCGaGCCa -3'
miRNA:   3'- acaUG-AGCAGuaCGC---GGCGCGUcUGG- -5'
24487 3' -55.4 NC_005264.1 + 48198 0.67 0.894661
Target:  5'- cGUGCUCGUUcgucUGUGCCGgGCcGAg- -3'
miRNA:   3'- aCAUGAGCAGu---ACGCGGCgCGuCUgg -5'
24487 3' -55.4 NC_005264.1 + 36803 0.67 0.894661
Target:  5'- gGUACUgGagAggaGCCGcCGCGGGCCa -3'
miRNA:   3'- aCAUGAgCagUacgCGGC-GCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 87601 0.67 0.894661
Target:  5'- cGUGgUCG-CGUuauacaagacgGcCGCCGCGCAGgGCCg -3'
miRNA:   3'- aCAUgAGCaGUA-----------C-GCGGCGCGUC-UGG- -5'
24487 3' -55.4 NC_005264.1 + 6770 0.67 0.894661
Target:  5'- aUGUAUUCGcgCA-GCGCCG-GCAuGGCUa -3'
miRNA:   3'- -ACAUGAGCa-GUaCGCGGCgCGU-CUGG- -5'
24487 3' -55.4 NC_005264.1 + 155829 0.67 0.894661
Target:  5'- gGUACUgGagAggaGCCGcCGCGGGCCa -3'
miRNA:   3'- aCAUGAgCagUacgCGGC-GCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 136903 0.67 0.887976
Target:  5'- cGUACgugagccgCGUCGUGCagugcaGCCGCuucgugGCGGACa -3'
miRNA:   3'- aCAUGa-------GCAGUACG------CGGCG------CGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 131689 0.68 0.881067
Target:  5'- cGUcgGCUCG-CAaGCGuaGCGUGGGCCu -3'
miRNA:   3'- aCA--UGAGCaGUaCGCggCGCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 10513 0.68 0.874661
Target:  5'- gGUACUCGcCGagcggguccugugcgGCGCCGCccucaggggcGCGGAUCg -3'
miRNA:   3'- aCAUGAGCaGUa--------------CGCGGCG----------CGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 129540 0.68 0.874661
Target:  5'- gGUACUCGcCGagcggguccugugcgGCGCCGCccucaggggcGCGGAUCg -3'
miRNA:   3'- aCAUGAGCaGUa--------------CGCGGCG----------CGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 60226 0.68 0.866595
Target:  5'- cGU-CUCGUUgaaaGCGCCGCGagAGGCUa -3'
miRNA:   3'- aCAuGAGCAGua--CGCGGCGCg-UCUGG- -5'
24487 3' -55.4 NC_005264.1 + 52515 0.68 0.866595
Target:  5'- uUGcUGCUgGauuUCGUGCGCCGCGU-GGCa -3'
miRNA:   3'- -AC-AUGAgC---AGUACGCGGCGCGuCUGg -5'
24487 3' -55.4 NC_005264.1 + 30072 0.68 0.866595
Target:  5'- ---cCUCGUCGgcgcCGCCGCGCccGGACa -3'
miRNA:   3'- acauGAGCAGUac--GCGGCGCG--UCUGg -5'
24487 3' -55.4 NC_005264.1 + 59980 0.68 0.866595
Target:  5'- -uUACgUGUCugcaGCGCCGCaGCAGGCUc -3'
miRNA:   3'- acAUGaGCAGua--CGCGGCG-CGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 43657 0.68 0.865849
Target:  5'- gUGUACg-GUCGgcGCGCUGCGCGccggcguuaaggcGGCCg -3'
miRNA:   3'- -ACAUGagCAGUa-CGCGGCGCGU-------------CUGG- -5'
24487 3' -55.4 NC_005264.1 + 162683 0.68 0.865849
Target:  5'- gUGUACg-GUCGgcGCGCUGCGCGccggcguuaaggcGGCCg -3'
miRNA:   3'- -ACAUGagCAGUa-CGCGGCGCGU-------------CUGG- -5'
24487 3' -55.4 NC_005264.1 + 64728 0.68 0.859042
Target:  5'- uUGggGCUCGgcgcCGUGCcCCGCGCAagGAUCg -3'
miRNA:   3'- -ACa-UGAGCa---GUACGcGGCGCGU--CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.