miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 3' -55.4 NC_005264.1 + 113592 0.66 0.924616
Target:  5'- cUGUcACUCGcCAacUGCCGCGCAcucgugcauGACCu -3'
miRNA:   3'- -ACA-UGAGCaGUacGCGGCGCGU---------CUGG- -5'
24487 3' -55.4 NC_005264.1 + 131458 0.66 0.924616
Target:  5'- cGUGCUUGgag-GCGCgGUGCGGuCUa -3'
miRNA:   3'- aCAUGAGCaguaCGCGgCGCGUCuGG- -5'
24487 3' -55.4 NC_005264.1 + 12431 0.66 0.924616
Target:  5'- cGUGCUUGgag-GCGCgGUGCGGuCUa -3'
miRNA:   3'- aCAUGAGCaguaCGCGgCGCGUCuGG- -5'
24487 3' -55.4 NC_005264.1 + 122162 0.66 0.921332
Target:  5'- cGUGCUCGaCGccgaacgGCGCCagcguaguaaggcucGCGCAG-CCa -3'
miRNA:   3'- aCAUGAGCaGUa------CGCGG---------------CGCGUCuGG- -5'
24487 3' -55.4 NC_005264.1 + 120085 0.66 0.919095
Target:  5'- --gGCUagcgggaGUCGUGCccaccggguGCCGCGCAGAa- -3'
miRNA:   3'- acaUGAg------CAGUACG---------CGGCGCGUCUgg -5'
24487 3' -55.4 NC_005264.1 + 31829 0.66 0.919095
Target:  5'- cGUACUCugcc-GUGCCGCGCGcGGCa -3'
miRNA:   3'- aCAUGAGcaguaCGCGGCGCGU-CUGg -5'
24487 3' -55.4 NC_005264.1 + 57966 0.66 0.919095
Target:  5'- uUGUGCcuaUCGUCAU-CGgaguccCCGCGCGGcgGCCg -3'
miRNA:   3'- -ACAUG---AGCAGUAcGC------GGCGCGUC--UGG- -5'
24487 3' -55.4 NC_005264.1 + 138324 0.66 0.919095
Target:  5'- aGUugUgGUCAUgGCGCgUGCGC-GACa -3'
miRNA:   3'- aCAugAgCAGUA-CGCG-GCGCGuCUGg -5'
24487 3' -55.4 NC_005264.1 + 150855 0.66 0.919095
Target:  5'- cGUACUCugcc-GUGCCGCGCGcGGCa -3'
miRNA:   3'- aCAUGAGcaguaCGCGGCGCGU-CUGg -5'
24487 3' -55.4 NC_005264.1 + 106429 0.67 0.913338
Target:  5'- --aGCUCGaCG-GCGCCGCGCucGAUa -3'
miRNA:   3'- acaUGAGCaGUaCGCGGCGCGu-CUGg -5'
24487 3' -55.4 NC_005264.1 + 33507 0.67 0.913338
Target:  5'- aGUGCgCGUCGcUGCGCC-CgGUAGGCg -3'
miRNA:   3'- aCAUGaGCAGU-ACGCGGcG-CGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 101053 0.67 0.913338
Target:  5'- cGUAguaUCGUU-UGUGCaCGCGgGGGCCa -3'
miRNA:   3'- aCAUg--AGCAGuACGCG-GCGCgUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 152534 0.67 0.913338
Target:  5'- aGUGCgCGUCGcUGCGCC-CgGUAGGCg -3'
miRNA:   3'- aCAUGaGCAGU-ACGCGGcG-CGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 97417 0.67 0.910969
Target:  5'- gUGUGUUCGgCAgugagcgcugcggGCGCCGCcGCGGAUCu -3'
miRNA:   3'- -ACAUGAGCaGUa------------CGCGGCG-CGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 87432 0.67 0.907345
Target:  5'- cGUACacugCccGCgGCCGCGCAGACg -3'
miRNA:   3'- aCAUGagcaGuaCG-CGGCGCGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 8706 0.67 0.907345
Target:  5'- --aACUCGcUC-UGCGCgCGCGU-GGCCg -3'
miRNA:   3'- acaUGAGC-AGuACGCG-GCGCGuCUGG- -5'
24487 3' -55.4 NC_005264.1 + 75394 0.67 0.907345
Target:  5'- gGUGCgcgccacCGUC-UGCGCgGCcGCGGGCa -3'
miRNA:   3'- aCAUGa------GCAGuACGCGgCG-CGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 123477 0.67 0.907345
Target:  5'- aUGUACggG-CAUGCggugGCCGCGCGGuuGCUg -3'
miRNA:   3'- -ACAUGagCaGUACG----CGGCGCGUC--UGG- -5'
24487 3' -55.4 NC_005264.1 + 89758 0.67 0.907345
Target:  5'- --cACcCGUCGaaguagaGaUGCCGCGCGGGCCa -3'
miRNA:   3'- acaUGaGCAGUa------C-GCGGCGCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 108512 0.67 0.901118
Target:  5'- gGUACggCGUCGUGCGCCaccacCGUGGcACa -3'
miRNA:   3'- aCAUGa-GCAGUACGCGGc----GCGUC-UGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.