miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 3' -55.4 NC_005264.1 + 26353 0.7 0.782746
Target:  5'- -uUAgUC-UUGUGCGCCGCGgCAGGCUg -3'
miRNA:   3'- acAUgAGcAGUACGCGGCGC-GUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 101391 0.7 0.791871
Target:  5'- --cGCUCGagCAacucgGCGCCGaggaGCGGGCCg -3'
miRNA:   3'- acaUGAGCa-GUa----CGCGGCg---CGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 31125 0.7 0.791871
Target:  5'- --cACgagCGcCAgcaaCGCCGCGCAGGCCc -3'
miRNA:   3'- acaUGa--GCaGUac--GCGGCGCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 136461 0.69 0.800854
Target:  5'- --gGCcgCGcUCAgagacgGCGCCGCGCAGccuGCCg -3'
miRNA:   3'- acaUGa-GC-AGUa-----CGCGGCGCGUC---UGG- -5'
24487 3' -55.4 NC_005264.1 + 88531 0.69 0.800854
Target:  5'- --gACUCGUUG-GCcauGCCGCGCgccAGACCg -3'
miRNA:   3'- acaUGAGCAGUaCG---CGGCGCG---UCUGG- -5'
24487 3' -55.4 NC_005264.1 + 67077 0.69 0.809685
Target:  5'- aGUACUCG-CA--CGCCGCGUacAGAUCc -3'
miRNA:   3'- aCAUGAGCaGUacGCGGCGCG--UCUGG- -5'
24487 3' -55.4 NC_005264.1 + 19908 0.69 0.809685
Target:  5'- gGUGCUUuGUgGUgGCGCCGUGcCAGuACCu -3'
miRNA:   3'- aCAUGAG-CAgUA-CGCGGCGC-GUC-UGG- -5'
24487 3' -55.4 NC_005264.1 + 85048 0.69 0.809685
Target:  5'- -aUGC-CGUC-UGCGCCGCGguGcgucucugcgGCCg -3'
miRNA:   3'- acAUGaGCAGuACGCGGCGCguC----------UGG- -5'
24487 3' -55.4 NC_005264.1 + 38141 0.69 0.818357
Target:  5'- cUGUACUCGUgggaacgcagCAUGCgugcgacuaccGCCGCGCuguggGGACa -3'
miRNA:   3'- -ACAUGAGCA----------GUACG-----------CGGCGCG-----UCUGg -5'
24487 3' -55.4 NC_005264.1 + 157168 0.69 0.818357
Target:  5'- cUGUACUCGUgggaacgcagCAUGCgugcgacuaccGCCGCGCuguggGGACa -3'
miRNA:   3'- -ACAUGAGCA----------GUACG-----------CGGCGCG-----UCUGg -5'
24487 3' -55.4 NC_005264.1 + 138204 0.69 0.82686
Target:  5'- gUGgggAUUaagCAUGCGCUGCGCGguGACCa -3'
miRNA:   3'- -ACa--UGAgcaGUACGCGGCGCGU--CUGG- -5'
24487 3' -55.4 NC_005264.1 + 93160 0.68 0.843332
Target:  5'- aGUcAC-CGUCGggGCGCCGCucCAGACUg -3'
miRNA:   3'- aCA-UGaGCAGUa-CGCGGCGc-GUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 12616 0.68 0.843332
Target:  5'- -uUACUCGU----CGCCGCGCAaGACUa -3'
miRNA:   3'- acAUGAGCAguacGCGGCGCGU-CUGG- -5'
24487 3' -55.4 NC_005264.1 + 87743 0.68 0.851285
Target:  5'- --aGCUCGgcgCcgGCGCCuGCcGCAGcGCCg -3'
miRNA:   3'- acaUGAGCa--GuaCGCGG-CG-CGUC-UGG- -5'
24487 3' -55.4 NC_005264.1 + 79868 0.68 0.851285
Target:  5'- cGUACcuUCGUCAcggggGCGCgGCgGC-GACCg -3'
miRNA:   3'- aCAUG--AGCAGUa----CGCGgCG-CGuCUGG- -5'
24487 3' -55.4 NC_005264.1 + 15243 0.68 0.859042
Target:  5'- aGUGgUCGUucugCAUGCGCC-UGC-GACCg -3'
miRNA:   3'- aCAUgAGCA----GUACGCGGcGCGuCUGG- -5'
24487 3' -55.4 NC_005264.1 + 64728 0.68 0.859042
Target:  5'- uUGggGCUCGgcgcCGUGCcCCGCGCAagGAUCg -3'
miRNA:   3'- -ACa-UGAGCa---GUACGcGGCGCGU--CUGG- -5'
24487 3' -55.4 NC_005264.1 + 162683 0.68 0.865849
Target:  5'- gUGUACg-GUCGgcGCGCUGCGCGccggcguuaaggcGGCCg -3'
miRNA:   3'- -ACAUGagCAGUa-CGCGGCGCGU-------------CUGG- -5'
24487 3' -55.4 NC_005264.1 + 43657 0.68 0.865849
Target:  5'- gUGUACg-GUCGgcGCGCUGCGCGccggcguuaaggcGGCCg -3'
miRNA:   3'- -ACAUGagCAGUa-CGCGGCGCGU-------------CUGG- -5'
24487 3' -55.4 NC_005264.1 + 52515 0.68 0.866595
Target:  5'- uUGcUGCUgGauuUCGUGCGCCGCGU-GGCa -3'
miRNA:   3'- -AC-AUGAgC---AGUACGCGGCGCGuCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.