miRNA display CGI


Results 21 - 40 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24487 3' -55.4 NC_005264.1 + 11660 0.66 0.944329
Target:  5'- -cUGCU-GUCGU-CGUCGCGCAauucGACCg -3'
miRNA:   3'- acAUGAgCAGUAcGCGGCGCGU----CUGG- -5'
24487 3' -55.4 NC_005264.1 + 100408 0.66 0.943882
Target:  5'- cGUAUUgGUCGugguUGUGCUGCGaagaagcCGGGCCc -3'
miRNA:   3'- aCAUGAgCAGU----ACGCGGCGC-------GUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 77311 0.66 0.943882
Target:  5'- aGUGuCUCGUUcaacgcucaguggAUGgacCGgCGUGCAGACCg -3'
miRNA:   3'- aCAU-GAGCAG-------------UAC---GCgGCGCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 28293 0.66 0.939755
Target:  5'- gGUAgaCGUuguuucauaccCAUGUGCCGCGC--GCCu -3'
miRNA:   3'- aCAUgaGCA-----------GUACGCGGCGCGucUGG- -5'
24487 3' -55.4 NC_005264.1 + 67383 0.66 0.938337
Target:  5'- cGgcgGCgUCGUCuacgAUGCGCCGCaucuccgggcaaccGCAGAgCa -3'
miRNA:   3'- aCa--UG-AGCAG----UACGCGGCG--------------CGUCUgG- -5'
24487 3' -55.4 NC_005264.1 + 28130 0.66 0.934945
Target:  5'- aUGUAaUCGUC-UGCGCUuugauucgccaGUGCGGGCg -3'
miRNA:   3'- -ACAUgAGCAGuACGCGG-----------CGCGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 154623 0.66 0.929899
Target:  5'- cGUACUCGgacCA-GCgGCCGCGgGGcauaauGCCa -3'
miRNA:   3'- aCAUGAGCa--GUaCG-CGGCGCgUC------UGG- -5'
24487 3' -55.4 NC_005264.1 + 46618 0.66 0.929899
Target:  5'- --cAC-CGUCGUGgGaCCGCGU-GGCCg -3'
miRNA:   3'- acaUGaGCAGUACgC-GGCGCGuCUGG- -5'
24487 3' -55.4 NC_005264.1 + 95653 0.66 0.939755
Target:  5'- --gGCgccgCGUCAUaGCGCU--GCAGGCCg -3'
miRNA:   3'- acaUGa---GCAGUA-CGCGGcgCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 106429 0.67 0.913338
Target:  5'- --aGCUCGaCG-GCGCCGCGCucGAUa -3'
miRNA:   3'- acaUGAGCaGUaCGCGGCGCGu-CUGg -5'
24487 3' -55.4 NC_005264.1 + 101053 0.67 0.913338
Target:  5'- cGUAguaUCGUU-UGUGCaCGCGgGGGCCa -3'
miRNA:   3'- aCAUg--AGCAGuACGCG-GCGCgUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 97417 0.67 0.910969
Target:  5'- gUGUGUUCGgCAgugagcgcugcggGCGCCGCcGCGGAUCu -3'
miRNA:   3'- -ACAUGAGCaGUa------------CGCGGCG-CGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 136903 0.67 0.887976
Target:  5'- cGUACgugagccgCGUCGUGCagugcaGCCGCuucgugGCGGACa -3'
miRNA:   3'- aCAUGa-------GCAGUACG------CGGCG------CGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 155829 0.67 0.894661
Target:  5'- gGUACUgGagAggaGCCGcCGCGGGCCa -3'
miRNA:   3'- aCAUGAgCagUacgCGGC-GCGUCUGG- -5'
24487 3' -55.4 NC_005264.1 + 6770 0.67 0.894661
Target:  5'- aUGUAUUCGcgCA-GCGCCG-GCAuGGCUa -3'
miRNA:   3'- -ACAUGAGCa-GUaCGCGGCgCGU-CUGG- -5'
24487 3' -55.4 NC_005264.1 + 143958 0.67 0.901118
Target:  5'- ---uCUCGUCAcaaGCCGCGguGGCa -3'
miRNA:   3'- acauGAGCAGUacgCGGCGCguCUGg -5'
24487 3' -55.4 NC_005264.1 + 108512 0.67 0.901118
Target:  5'- gGUACggCGUCGUGCGCCaccacCGUGGcACa -3'
miRNA:   3'- aCAUGa-GCAGUACGCGGc----GCGUC-UGg -5'
24487 3' -55.4 NC_005264.1 + 8706 0.67 0.907345
Target:  5'- --aACUCGcUC-UGCGCgCGCGU-GGCCg -3'
miRNA:   3'- acaUGAGC-AGuACGCG-GCGCGuCUGG- -5'
24487 3' -55.4 NC_005264.1 + 87432 0.67 0.907345
Target:  5'- cGUACacugCccGCgGCCGCGCAGACg -3'
miRNA:   3'- aCAUGagcaGuaCG-CGGCGCGUCUGg -5'
24487 3' -55.4 NC_005264.1 + 152534 0.67 0.913338
Target:  5'- aGUGCgCGUCGcUGCGCC-CgGUAGGCg -3'
miRNA:   3'- aCAUGaGCAGU-ACGCGGcG-CGUCUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.