Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24487 | 3' | -55.4 | NC_005264.1 | + | 30072 | 0.68 | 0.866595 |
Target: 5'- ---cCUCGUCGgcgcCGCCGCGCccGGACa -3' miRNA: 3'- acauGAGCAGUac--GCGGCGCG--UCUGg -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 162683 | 0.68 | 0.865849 |
Target: 5'- gUGUACg-GUCGgcGCGCUGCGCGccggcguuaaggcGGCCg -3' miRNA: 3'- -ACAUGagCAGUa-CGCGGCGCGU-------------CUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 42009 | 0.7 | 0.773486 |
Target: 5'- cGUGCUCGUCGgccacgGCGgcagugucgaCGCGCAcgcGGCCu -3' miRNA: 3'- aCAUGAGCAGUa-----CGCg---------GCGCGU---CUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 116967 | 0.7 | 0.764101 |
Target: 5'- gUGUcGCUUG-CAUugGCGgCGCGCAGACUc -3' miRNA: 3'- -ACA-UGAGCaGUA--CGCgGCGCGUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 84157 | 0.71 | 0.735283 |
Target: 5'- aGUGgUCG-CA-GCGCgCGCGCcGGACCu -3' miRNA: 3'- aCAUgAGCaGUaCGCG-GCGCG-UCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 135180 | 0.71 | 0.705665 |
Target: 5'- cGUAcCUCGgucCGaGCGCCGCGU-GGCCa -3' miRNA: 3'- aCAU-GAGCa--GUaCGCGGCGCGuCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 64141 | 0.71 | 0.695657 |
Target: 5'- --gGCUCGcCAcgGCGCCGCGauccGGCCg -3' miRNA: 3'- acaUGAGCaGUa-CGCGGCGCgu--CUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 49252 | 0.72 | 0.685596 |
Target: 5'- cUGUGCUCGUacaagcuaaaCA-GCGUCGCGgAGACg -3' miRNA: 3'- -ACAUGAGCA----------GUaCGCGGCGCgUCUGg -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 146330 | 0.74 | 0.540864 |
Target: 5'- uUGUACcaucCGUC-UGCGCCGgcgugccucgacccCGCAGGCCa -3' miRNA: 3'- -ACAUGa---GCAGuACGCGGC--------------GCGUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 8322 | 0.74 | 0.533944 |
Target: 5'- --cGCUUGUUugcgcgcggcauGUGCGCCcCGCAGACCu -3' miRNA: 3'- acaUGAGCAG------------UACGCGGcGCGUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 47536 | 0.7 | 0.773486 |
Target: 5'- --aGCUCGUCAggaaGgGCUGCGCGGgACg -3' miRNA: 3'- acaUGAGCAGUa---CgCGGCGCGUC-UGg -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 31125 | 0.7 | 0.791871 |
Target: 5'- --cACgagCGcCAgcaaCGCCGCGCAGGCCc -3' miRNA: 3'- acaUGa--GCaGUac--GCGGCGCGUCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 64728 | 0.68 | 0.859042 |
Target: 5'- uUGggGCUCGgcgcCGUGCcCCGCGCAagGAUCg -3' miRNA: 3'- -ACa-UGAGCa---GUACGcGGCGCGU--CUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 12616 | 0.68 | 0.843332 |
Target: 5'- -uUACUCGU----CGCCGCGCAaGACUa -3' miRNA: 3'- acAUGAGCAguacGCGGCGCGU-CUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 138204 | 0.69 | 0.82686 |
Target: 5'- gUGgggAUUaagCAUGCGCUGCGCGguGACCa -3' miRNA: 3'- -ACa--UGAgcaGUACGCGGCGCGU--CUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 157168 | 0.69 | 0.818357 |
Target: 5'- cUGUACUCGUgggaacgcagCAUGCgugcgacuaccGCCGCGCuguggGGACa -3' miRNA: 3'- -ACAUGAGCA----------GUACG-----------CGGCGCG-----UCUGg -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 67077 | 0.69 | 0.809685 |
Target: 5'- aGUACUCG-CA--CGCCGCGUacAGAUCc -3' miRNA: 3'- aCAUGAGCaGUacGCGGCGCG--UCUGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 19908 | 0.69 | 0.809685 |
Target: 5'- gGUGCUUuGUgGUgGCGCCGUGcCAGuACCu -3' miRNA: 3'- aCAUGAG-CAgUA-CGCGGCGC-GUC-UGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 136461 | 0.69 | 0.800854 |
Target: 5'- --gGCcgCGcUCAgagacgGCGCCGCGCAGccuGCCg -3' miRNA: 3'- acaUGa-GC-AGUa-----CGCGGCGCGUC---UGG- -5' |
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24487 | 3' | -55.4 | NC_005264.1 | + | 88531 | 0.69 | 0.800854 |
Target: 5'- --gACUCGUUG-GCcauGCCGCGCgccAGACCg -3' miRNA: 3'- acaUGAGCAGUaCG---CGGCGCG---UCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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